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4CYV
Asym. Unit
Info
Asym.Unit (515 KB)
Biol.Unit 1 (505 KB)
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(1)
Title
:
STRUCTURE OF THE A_MALLARD_SWEDEN_51_2002 H10 AVIAN HAEMMAGLUTININ
Authors
:
S. G. Vachieri, X. Xiong, P. J. Collins, P. A. Walker, S. R. Martin, L. F. H J. W. Mccauley, S. J. Gamblin, J. J. Skehel
Date
:
15 Apr 14 (Deposition) - 11 Jun 14 (Release) - 30 Jul 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. G. Vachieri, X. Xiong, P. J. Collins, P. A. Walker, S. R. Martin, L. F. Haire, Y. Zhang, J. W. Mccauley, S. J. Gamblin, J. J. Skehel
Receptor Binding By H10 Influenza Viruses.
Nature V. 511 475 2014
[
close entry info
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Hetero Components
(4, 44)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
EDO
18
Ligand/Ion
1,2-ETHANEDIOL
3
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
16
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:269 , TRP A:283 , ARG A:300 , HOH A:2052 , HOH A:2069 , GLU B:69
BINDING SITE FOR RESIDUE EDO A1326
02
AC2
SOFTWARE
PRO A:299 , HOH A:2067 , LYS B:85 , ILE B:88 , THR B:89 , EDO B:1175 , TRP F:83
BINDING SITE FOR RESIDUE EDO B1173
03
AC3
SOFTWARE
THR A:301 , HOH A:2060 , HOH A:2063 , HOH A:2064 , PHE B:63 , EDO B:1175 , TRP F:83
BINDING SITE FOR RESIDUE EDO B1174
04
AC4
SOFTWARE
GLN C:269 , TRP C:283 , ARG C:284 , ARG C:300 , HOH C:2076 , GLU D:69
BINDING SITE FOR RESIDUE EDO C1326
05
AC5
SOFTWARE
TRP D:83 , PRO E:299 , HOH E:2047 , LYS F:85 , THR F:89 , EDO F:1174
BINDING SITE FOR RESIDUE EDO F1173
06
AC6
SOFTWARE
TRP D:83 , THR E:301 , HOH E:2045 , PHE F:63 , EDO F:1173
BINDING SITE FOR RESIDUE EDO F1174
07
AC7
SOFTWARE
LEU E:70 , LEU E:177 , MET E:179 , PRO E:254 , ARG E:256 , VAL E:257 , SER E:258
BINDING SITE FOR RESIDUE EDO E1326
08
AC8
SOFTWARE
LYS A:59 , ASP A:60 , ARG C:50
BINDING SITE FOR RESIDUE EDO A1327
09
AC9
SOFTWARE
LEU A:70 , LEU A:177 , MET A:179 , PRO A:254 , ARG A:256 , VAL A:257 , SER A:258
BINDING SITE FOR RESIDUE EDO A1328
10
BC1
SOFTWARE
LYS A:307 , HOH A:2066 , HOH A:2067 , PHE B:63 , ILE B:88 , EDO B:1173 , EDO B:1174 , SER F:87
BINDING SITE FOR RESIDUE EDO B1175
11
BC2
SOFTWARE
LEU B:98 , MET B:102 , LEU D:98 , MET D:102 , GLN F:95 , LEU F:98 , MET F:102
BINDING SITE FOR RESIDUE EDO F1175
12
BC3
SOFTWARE
SER C:57 , THR C:83 , TRP C:84 , ASP C:85 , HOH C:2035 , ASP E:49 , ARG E:50
BINDING SITE FOR RESIDUE EDO C1327
13
BC4
SOFTWARE
LEU C:70 , MET C:179 , PRO C:254 , ARG C:256 , SER C:258
BINDING SITE FOR RESIDUE EDO C1328
14
BC5
SOFTWARE
GLY C:218 , ALA C:219 , ARG C:220 , SER E:203 , VAL E:204 , GLY E:205 , GLN E:210 , THR E:244 , SER E:246
BINDING SITE FOR RESIDUE EDO E1327
15
BC6
SOFTWARE
GLU D:72 , HIS D:75 , LYS E:111
BINDING SITE FOR RESIDUE EDO D1173
16
BC7
SOFTWARE
LEU E:15 , GLY E:16 , HIS E:17 , ILE F:10 , ASN F:12 , GLY F:13 , TRP F:14
BINDING SITE FOR RESIDUE EDO F1176
17
BC8
SOFTWARE
LEU E:154 , PHE E:161 , TYR E:195 , HIS E:247 , GLY E:249 , GLY E:250 , LEU E:251
BINDING SITE FOR RESIDUE EDO E1328
18
BC9
SOFTWARE
ASN B:79 , GLN C:110 , GLU C:114 , HOH C:2047 , GLU D:64 , SER D:65
BINDING SITE FOR RESIDUE EDO C1329
19
CC1
SOFTWARE
ASN A:38
BINDING SITE FOR MONO-SACCHARIDE NAG A 420 BOUND TO ASN A 38
20
CC2
SOFTWARE
ARG A:169 , GLY A:240 , ASN A:242
BINDING SITE FOR MONO-SACCHARIDE NAG A 401 BOUND TO ASN A 242
21
CC3
SOFTWARE
HIS B:75 , ASN B:79 , ASN B:82 , HOH B:2020 , HOH B:2041 , HOH B:2042 , GLU C:114 , ARG C:264
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 201 THROUGH MAN B 207 BOUND TO ASN B 82
22
CC4
SOFTWARE
GLU B:150 , ASN B:154 , THR B:156 , HOH B:2038
BINDING SITE FOR MONO-SACCHARIDE NAG B 211 BOUND TO ASN B 154
23
CC5
SOFTWARE
ASN C:38 , LEU D:52
BINDING SITE FOR MONO-SACCHARIDE NAG C 420 BOUND TO ASN C 38
24
CC6
SOFTWARE
GLY C:240 , ASP C:241 , ASN C:242
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 401 THROUGH BMA C 403 BOUND TO ASN C 242
25
CC7
SOFTWARE
ARG C:300 , HIS D:75 , ASN D:79 , ASN D:82 , HOH D:2024 , HOH D:2026 , GLU E:114 , ARG E:264
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG D 201 THROUGH MAN D 207 BOUND TO ASN D 82
26
CC8
SOFTWARE
SER D:147 , GLU D:150 , ASN D:154 , HOH D:2027
BINDING SITE FOR MONO-SACCHARIDE NAG D 211 BOUND TO ASN D 154
27
CC9
SOFTWARE
ASN E:38 , THR E:40
BINDING SITE FOR MONO-SACCHARIDE NAG E 420 BOUND TO ASN E 38
28
DC1
SOFTWARE
PRO C:221 , ARG E:169 , GLY E:240 , ASP E:241 , ASN E:242
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 401 THROUGH NAG E 402 BOUND TO ASN E 242
29
DC2
SOFTWARE
GLU A:114 , HIS F:75 , ASN F:79 , ASN F:82 , HOH F:2014
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG F 201 THROUGH MAN F 205 BOUND TO ASN F 82
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
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Hetero
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All Atoms
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Protein & NOT Site
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Chain A
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Chain D
Chain E
Chain F
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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