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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPUTATIONALLY DESIGNED PIZZA6 PROTEIN
 
Authors :  A. R. D. Voet, H. Noguchi, C. Addy, D. Simoncini, D. Terada, S. Unzai, S. Y K. Y. J. Zhang, J. R. H. Tame
Date :  17 Jun 14  (Deposition) - 08 Oct 14  (Release) - 05 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.33
Chains :  Asym./Biol. Unit :  A
Keywords :  Computational Protein Design, Self-Assembly, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. R. D. Voet, H. Noguchi, C. Addy, D. Simoncini, D. Terada, S. Unzai, S. Y. Park, K. Y. J. Zhang, J. R. H. Tame
Computational Design Of A Self-Assembling Symmetrical Beta-Propeller Protein.
Proc. Natl. Acad. Sci. Usa V. 111 15102 2014
PubMed-ID: 25288768  |  Reference-DOI: 10.1073/PNAS.1412768111

(-) Compounds

Molecule 1 - PIZZA6 PROTEIN
    Chains: A
    Engineered: YES
    Other Details: THE PROTEIN WAS DESIGNED.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2SO43Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:1 , ASN A:2 , THR A:3 , THR A:136 , GLY A:137 , ARG A:161 , HOH A:468 , HOH A:631 , HOH A:633 , HOH A:634BINDING SITE FOR RESIDUE SO4 A 301
2AC2SOFTWARETHR A:10 , GLY A:11 , ARG A:35 , GLN A:46 , THR A:129 , SER A:232 , GOL A:306 , HOH A:542 , HOH A:622BINDING SITE FOR RESIDUE SO4 A 302
3AC3SOFTWAREGLY A:42 , PHE A:177 , THR A:178 , GLY A:179 , HOH A:441 , HOH A:512 , HOH A:584 , HOH A:642BINDING SITE FOR RESIDUE SO4 A 303
4AC4SOFTWARESER A:1 , LYS A:206 , LEU A:217 , LEU A:249 , ALA A:250 , ALA A:251 , HOH A:427 , HOH A:624BINDING SITE FOR RESIDUE GOL A 304
5AC5SOFTWAREASN A:75 , ASN A:76 , HIS A:199 , THR A:224 , HIS A:241 , HOH A:499BINDING SITE FOR RESIDUE GOL A 305
6AC6SOFTWAREGLY A:11 , SER A:22 , ALA A:23 , GLY A:24 , ASN A:33 , ARG A:35 , SER A:232 , SO4 A:302 , HOH A:524 , HOH A:552 , HOH A:564 , HOH A:646BINDING SITE FOR RESIDUE GOL A 306
7AC7SOFTWAREHIS A:115 , THR A:140 , ASN A:142 , HIS A:157BINDING SITE FOR RESIDUE GOL A 307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WW9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3WW9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WW9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WW9)

(-) Exons   (0, 0)

(no "Exon" information available for 3WW9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:251
                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee............ee.....eeeeehhhheeeee.......ee............ee.....eeeee....eeeee......eee........eeeeee.....eeeee.hhheeeee......eee...........eee.....eeeeehhhheeeee.......ee...........eee.....eeeeehhhheeeee.......ee...........eee.....eeeeehhhheeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ww9 A   1 SNTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAA 251
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WW9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WW9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WW9)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3WW9)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3WW9)

(-) Related Entries Specified in the PDB File

3ww7 3ww8 3wwa 3wwb 3wwf