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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPUTATIONALLY DESIGNED PIZZA2 PROTEIN
 
Authors :  A. R. D. Voet, H. Noguchi, C. Addy, D. Simoncini, D. Terada, S. Unzai, S. Y K. Y. J. Zhang, J. R. H. Tame
Date :  17 Jun 14  (Deposition) - 08 Oct 14  (Release) - 05 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Computational Protein Design, Self-Assembly, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. R. D. Voet, H. Noguchi, C. Addy, D. Simoncini, D. Terada, S. Unzai, S. Y. Park, K. Y. J. Zhang, J. R. H. Tame
Computational Design Of A Self-Assembling Symmetrical Beta-Propeller Protein.
Proc. Natl. Acad. Sci. Usa V. 111 15102 2014
PubMed-ID: 25288768  |  Reference-DOI: 10.1073/PNAS.1412768111

(-) Compounds

Molecule 1 - PIZZA2 PROTEIN
    Chains: A, B, C
    Engineered: YES
    Other Details: THE PROTEIN WAS DESIGNED.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:31 , ASN A:58 , HIS A:73 , ASN B:16 , GOL B:101 , HOH B:275BINDING SITE FOR RESIDUE GOL A 101
2AC2SOFTWAREHIS A:73 , GOL A:101 , PRO B:8 , THR B:10 , THR B:14 , ASN B:16 , HIS B:31 , ASN B:44 , HOH B:256BINDING SITE FOR RESIDUE GOL B 101
3AC3SOFTWAREASN A:16 , HIS C:31 , THR C:56 , ASN C:58 , HIS C:73 , HOH C:229 , HOH C:279 , HOH C:280BINDING SITE FOR RESIDUE GOL C 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WW7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3WW7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WW7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WW7)

(-) Exons   (0, 0)

(no "Exon" information available for 3WW7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:82
                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...........eee.....eeeeehhhheeeee.......ee............ee.....eeeeehhhheeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  3ww7 A  2 NTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAA 83
                                    11        21        31        41        51        61        71        81  


Chain B from PDB  Type:PROTEIN  Length:82
                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee........eeeeee.....eeeee....eeeee.......ee........eeeeee.....eeeee.hhheeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  3ww7 B  2 NTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAA 83
                                    11        21        31        41        51        61        71        81  


Chain C from PDB  Type:PROTEIN  Length:82
                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...........eee.....eeeeehhhheeeee......eee............ee.....eeeeehhhheeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  3ww7 C  2 NTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAA 83
                                    11        21        31        41        51        61        71        81
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WW7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WW7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WW7)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3WW7)

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  3ww7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3WW7)

(-) Related Entries Specified in the PDB File

3ww8 3ww9 3wwa 3wwb 3wwf