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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPUTATIONALLY DESIGNED PIZZA3 PROTEIN
 
Authors :  A. R. D. Voet, H. Noguchi, C. Addy, D. Simoncini, D. Terada, S. Unzai, S. Y K. Y. J. Zhang, J. R. H. Tame
Date :  17 Jun 14  (Deposition) - 08 Oct 14  (Release) - 05 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Computational Protein Design, Self-Assembly, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. R. D. Voet, H. Noguchi, C. Addy, D. Simoncini, D. Terada, S. Unzai, S. Y. Park, K. Y. J. Zhang, J. R. H. Tame
Computational Design Of A Self-Assembling Symmetrical Beta-Propeller Protein.
Proc. Natl. Acad. Sci. Usa V. 111 15102 2014
PubMed-ID: 25288768  |  Reference-DOI: 10.1073/PNAS.1412768111

(-) Compounds

Molecule 1 - PIZZA3 PROTEIN
    Chains: A, B
    Engineered: YES
    Other Details: THE PROTEIN WAS DESIGNED.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2SO43Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:98 , HIS A:115 , GLY A:116 , HOH A:335 , HOH A:340 , ASN B:76 , HOH B:359BINDING SITE FOR RESIDUE SO4 A 201
2AC2SOFTWAREHIS A:115 , HOH A:419 , THR B:14 , HIS B:31BINDING SITE FOR RESIDUE SO4 A 202
3AC3SOFTWARETHR A:94 , GLY A:95 , HOH A:345 , HOH A:353BINDING SITE FOR RESIDUE SO4 A 203
4AC4SOFTWAREASN A:75 , ASN A:76 , HOH A:353 , HOH A:370 , HOH A:403 , HIS B:73 , THR B:98BINDING SITE FOR RESIDUE GOL B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3WW8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3WW8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3WW8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3WW8)

(-) Exons   (0, 0)

(no "Exon" information available for 3WW8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:125
                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee............ee.....eeeeehhhheeeee.......ee........eeeeee.....eeeee....eeeee......eee........eeeeee.....eeeee.hhheeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ww8 A   1 SNTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAA 125
                                    10        20        30        40        50        60        70        80        90       100       110       120     


Chain B from PDB  Type:PROTEIN  Length:125
                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...........eee.....eeeeehhhheeeee.......ee...........eee.....eeeeehhhheeeee.......ee...........eee.....eeeeehhhheeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ww8 B   1 SNTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAAGSNTQTVLPFTGLNTPNGVAVDSAGTVYVTDHGNNRVVKLAA 125
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3WW8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3WW8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3WW8)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3WW8)

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  Cis Peptide Bonds
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  3ww8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3WW8)

(-) Related Entries Specified in the PDB File

3ww7 3ww9 3wwa 3wwb 3wwf