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(-) Description

Title :  CRYSTAL STRUCTURE OF HYDROPHOBIN HFBI WITH DETERGENT
 
Authors :  J. M. Hakanpaa, J. Rouvinen
Date :  03 May 06  (Deposition) - 15 Aug 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (2x)
Biol. Unit 2:  A (2x),B (2x),C (2x),D (2x)
Biol. Unit 3:  A (2x),B (2x),C (2x),D (2x)
Biol. Unit 4:  A  (1x)
Biol. Unit 5:  B  (1x)
Biol. Unit 6:  C  (1x)
Biol. Unit 7:  D  (1x)
Keywords :  Hydrophobin, Amphiphile, Surfactant, High Solvent Content, Surface Active Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Hakanpaa, G. R. Szilvay, H. Kaljunen, M. Maksimainen, M. Linder, J. Rouvinen
Two Crystal Structures Of Trichoderma Reesei Hydrophobin Hfbi--The Structure Of A Protein Amphiphile With And Withou Detergent Interaction.
Protein Sci. V. 15 2129 2006
PubMed-ID: 16882996  |  Reference-DOI: 10.1110/PS.062326706

(-) Compounds

Molecule 1 - HYDROPHOBIN-1
    Chains: A, B, C, D
    Organism Scientific: HYPOCREA JECORINA
    Organism Taxid: 51453
    Synonym: HYDROPHOBIN I, HFBI

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x): ABCD
Biological Unit 2 (2x): A (2x)B (2x)C (2x)D (2x)
Biological Unit 3 (2x): A (2x)B (2x)C (2x)D (2x)
Biological Unit 4 (1x): A   
Biological Unit 5 (1x):  B  
Biological Unit 6 (1x):   C 
Biological Unit 7 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1LDA10Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
2ZN2Ligand/IonZINC ION
Biological Unit 1 (1, 20)
No.NameCountTypeFull Name
1LDA20Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 8)
No.NameCountTypeFull Name
1LDA8Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
2ZN-1Ligand/IonZINC ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1LDA-1Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
2ZN-1Ligand/IonZINC ION
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1LDA2Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
2ZN-1Ligand/IonZINC ION
Biological Unit 5 (1, 6)
No.NameCountTypeFull Name
1LDA6Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
2ZN-1Ligand/IonZINC ION
Biological Unit 6 (1, 2)
No.NameCountTypeFull Name
1LDA2Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
2ZN-1Ligand/IonZINC ION
Biological Unit 7 (0, 0)
No.NameCountTypeFull Name
1LDA-1Ligand/IonLAURYL DIMETHYLAMINE-N-OXIDE
2ZN-1Ligand/IonZINC ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:43 , HOH A:305 , ASP D:40 , ASP D:43BINDING SITE FOR RESIDUE ZN A 201
02AC2SOFTWAREASP B:40 , ASP B:43 , HOH B:328 , GLN C:36 , ASP C:43BINDING SITE FOR RESIDUE ZN B 202
03AC3SOFTWARELEU B:12 , PHE B:13 , LDA C:310BINDING SITE FOR RESIDUE LDA B 302
04AC4SOFTWAREILE A:27 , LDA C:310BINDING SITE FOR RESIDUE LDA A 303
05AC5SOFTWARELDA B:305 , LDA B:306BINDING SITE FOR RESIDUE LDA A 304
06AC6SOFTWARELDA A:304 , LDA B:308BINDING SITE FOR RESIDUE LDA B 305
07AC7SOFTWARELDA A:304BINDING SITE FOR RESIDUE LDA B 306
08AC8SOFTWARETHR B:21 , GLN B:22 , VAL B:23 , LEU B:29 , LDA B:309 , LEU C:24BINDING SITE FOR RESIDUE LDA B 307
09AC9SOFTWAREALA A:66 , ASP B:30 , LDA B:305 , HOH B:324 , VAL C:23BINDING SITE FOR RESIDUE LDA B 308
10BC1SOFTWARELDA B:307BINDING SITE FOR RESIDUE LDA B 309
11BC2SOFTWARELDA A:303 , LDA B:302 , GLN C:65 , VAL D:23BINDING SITE FOR RESIDUE LDA C 310

(-) SS Bonds  (16, 16)

Asymmetric Unit
No.Residues
1A:8 -A:57
2A:18 -A:48
3A:19 -A:31
4A:58 -A:69
5B:8 -B:57
6B:18 -B:48
7B:19 -B:31
8B:58 -B:69
9C:8 -C:57
10C:18 -C:48
11C:19 -C:31
12C:58 -C:69
13D:8 -D:57
14D:18 -D:48
15D:19 -D:31
16D:58 -D:69

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GVM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GVM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GVM)

(-) Exons   (0, 0)

(no "Exon" information available for 2GVM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:70
 aligned with HYP1_HYPJE | P52754 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:70
                                    37        47        57        67        77        87        97
            HYP1_HYPJE   28 NVCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAVGA 97
               SCOP domains d2gvma_ A: automated matches                                           SCOP domains
               CATH domains 2gvmA00 A:6-75 hfbii hydrophobin                                       CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeee...eeeeee.......hhhhhhhhhhh...eeeee.....eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  2gvm A  6 NVCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAVGA 75
                                    15        25        35        45        55        65        75


Chain B from PDB  Type:PROTEIN  Length:70
 aligned with HYP1_HYPJE | P52754 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:70
                                    37        47        57        67        77        87        97
            HYP1_HYPJE   28 NVCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAVGA 97
               SCOP domains d2gvmb_ B: automated matches                                           SCOP domains
               CATH domains 2gvmB00 B:6-75 hfbii hydrophobin                                       CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeee...eeeeee.......hhhhhhhhhhh...eeeee.....eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  2gvm B  6 NVCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAVGA 75
                                    15        25        35        45        55        65        75


Chain C from PDB  Type:PROTEIN  Length:70
 aligned with HYP1_HYPJE | P52754 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:70
                                    37        47        57        67        77        87        97
            HYP1_HYPJE   28 NVCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAVGA 97
               SCOP domains d2gvmc_ C: automated matches                                           SCOP domains
               CATH domains 2gvmC00 C:6-75 hfbii hydrophobin                                       CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeee...eeeeee.......hhhhhhhhhhh...eeeee.....eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  2gvm C  6 NVCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAVGA 75
                                    15        25        35        45        55        65        75


Chain D from PDB  Type:PROTEIN  Length:70
 aligned with HYP1_HYPJE | P52754 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:70
                                    37        47        57        67        77        87        97
            HYP1_HYPJE   28 NVCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAVGA 97
               SCOP domains d2gvmd_ D: automated matches                                           SCOP domains
               CATH domains 2gvmD00 D:6-75 hfbii hydrophobin                                       CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeee...eeeeee.......hhhhhhhhhhh...eeeee.....eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  2gvm D  6 NVCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAVGA 75
                                    15        25        35        45        55        65        75
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GVM)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (HYP1_HYPJE | P52754)
cellular component
    GO:0005618    cell wall    The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        HYP1_HYPJE | P52754: 2fz6

(-) Related Entries Specified in the PDB File

1r2m CRYSTAL STRUCTURE OF HYDROPHOBIN HFBII
2b97 CRYSTAL STRUCTURE OF HYDROPHOBIN HFBII AT ULTRA-HIGH RESOLUTION
2fz6 CRYSTAL STRUCTURE OF HYDROPHOBIN HFBI WITHOUT DETERGENT