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(-) Description

Title :  CRYSTAL STRUCTURE OF HYDROPHOBIN HFBI
 
Authors :  J. M. Hakanpaa, J. Rouvinen
Date :  09 Feb 06  (Deposition) - 15 Aug 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  A (2x),B (2x),C (2x),D (2x)
Biol. Unit 6:  A (1x),B (1x),C (1x),D (1x)
Biol. Unit 7:  A (1x),B (1x),C (1x),D (1x)
Biol. Unit 8:  A,B,C,D  (1x)
Biol. Unit 9:  A,B  (1x)
Biol. Unit 10:  C,D  (1x)
Biol. Unit 11:  B (2x),D (2x)
Biol. Unit 12:  A (1x),C (1x)
Biol. Unit 13:  A (2x),C (2x)
Biol. Unit 14:  B (1x),D (1x)
Keywords :  Hydrophobin, Beta Barrel, Pseudo-Merohedral Twinning, Amphiphile, Surface Active Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Hakanpaa, G. R. Szilvay, H. Kaljunen, M. Maksimainen, M. Linder, J. Rouvinen
Two Crystal Structures Of Trichoderma Reesei Hydrophobin Hfbi--The Structure Of A Protein Amphiphile With And Without Detergent Interaction.
Protein Sci. V. 15 2129 2006
PubMed-ID: 16882996  |  Reference-DOI: 10.1110/PS.062326706
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYDROPHOBIN-1
    Chains: A, B, C, D
    Organism Scientific: HYPOCREA JECORINA
    Organism Taxid: 51453
    Synonym: HYDROPHOBIN I, HFBI

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D
Biological Unit 5 (2x): A (2x)B (2x)C (2x)D (2x)
Biological Unit 6 (1x): A (1x)B (1x)C (1x)D (1x)
Biological Unit 7 (1x): A (1x)B (1x)C (1x)D (1x)
Biological Unit 8 (1x): ABCD
Biological Unit 9 (1x): AB  
Biological Unit 10 (1x):   CD
Biological Unit 11 (2x):  B (2x) D (2x)
Biological Unit 12 (1x): A (1x) C (1x) 
Biological Unit 13 (2x): A (2x) C (2x) 
Biological Unit 14 (1x):  B (1x) D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1ZN4Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 7 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 8 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 9 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 10 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 11 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 12 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 13 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 14 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:30 , HOH A:237 , ASP B:30 , HOH B:230BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWAREASP A:40 , ASP A:43 , ASP C:40 , ASP C:43BINDING SITE FOR RESIDUE ZN A 202
3AC3SOFTWAREASN B:37 , ASP B:43 , VAL B:47 , VAL D:38 , TYR D:39 , ASP D:40BINDING SITE FOR RESIDUE ZN B 203
4AC4SOFTWAREASP C:30 , ASP D:30BINDING SITE FOR RESIDUE ZN C 204

(-) SS Bonds  (16, 16)

Asymmetric Unit
No.Residues
1A:8 -A:57
2A:18 -A:48
3A:19 -A:31
4A:58 -A:69
5B:8 -B:57
6B:18 -B:48
7B:19 -B:31
8B:58 -B:69
9C:8 -C:57
10C:18 -C:48
11C:19 -C:31
12C:58 -C:69
13D:8 -D:57
14D:18 -D:48
15D:19 -D:31
16D:58 -D:69

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2FZ6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FZ6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FZ6)

(-) Exons   (0, 0)

(no "Exon" information available for 2FZ6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:72
 aligned with HYP1_HYPJE | P52754 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:72
                                    33        43        53        63        73        83        93  
            HYP1_HYPJE   24 NGNGNVCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAV 95
               SCOP domains d2fz6a_ A: automated matches                                             SCOP domains
               CATH domains 2fz6A00 A:2-73 hfbii hydrophobin                                         CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeeeeeee...eeeeee.......hhhhhhhhhhh...eeeee.....eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  2fz6 A  2 NGNGNVCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAV 73
                                    11        21        31        41        51        61        71  


Chain B from PDB  Type:PROTEIN  Length:69
 aligned with HYP1_HYPJE | P52754 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:69
                                    38        48        58        68        78        88         
            HYP1_HYPJE   29 VCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAVGA 97
               SCOP domains d2fz6b_ B: automated matches                                          SCOP domains
               CATH domains 2fz6B00 B:7-75 hfbii hydrophobin                                      CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeeee...eeeeee.......hhhhhhhhhh....eeeee..........eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2fz6 B  7 VCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAVGA 75
                                    16        26        36        46        56        66         


Chain C from PDB  Type:PROTEIN  Length:71
 aligned with HYP1_HYPJE | P52754 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:71
                                    36        46        56        66        76        86        96 
            HYP1_HYPJE   27 GNVCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAVGA 97
               SCOP domains d2fz6c_ C: automated matches                                            SCOP domains
               CATH domains 2fz6C00 C:5-75 hfbii hydrophobin                                        CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeeee...eeeeee.......hhhhhhhhhhh...eeeee.....eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  2fz6 C  5 GNVCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAVGA 75
                                    14        24        34        44        54        64        74 


Chain D from PDB  Type:PROTEIN  Length:69
 aligned with HYP1_HYPJE | P52754 from UniProtKB/Swiss-Prot  Length:97

    Alignment length:69
                                    37        47        57        67        77        87         
            HYP1_HYPJE   28 NVCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAVG 96
               SCOP domains d2fz6d_ D: automated matches                                          SCOP domains
               CATH domains 2fz6D00 D:6-74 hfbii hydrophobin                                      CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeeehhheeeeee.........hhhhhhhhhh..eeeee..........eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                  2fz6 D  6 NVCPPGLFSNPQCCATQVLGLIGLDCKVPSQNVYDGTDFRNVCAKTGAQPLCCVAPVAGQALLCQTAVG 74
                                    15        25        35        45        55        65
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FZ6)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (HYP1_HYPJE | P52754)
cellular component
    GO:0005618    cell wall    The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  2fz6
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 Related Entries

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        HYP1_HYPJE | P52754: 2gvm

(-) Related Entries Specified in the PDB File

1r2m CRYSTAL STRUCTURE OF HYDROPHOBIN HFBII
2b97 CRYSTAL STRUCTURE OF HYDROPHOBIN HFBII AT ULTRA-HIGH RESOLUTION OF 0.75
2fz7 CRYSTAL STRUCTURE OF HYDROPHOBIN HFBI WITH DETERGENT