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Title :   FIRST-SPHERE AND SECOND-SPHERE ELECTROSTATIC EFFECTS IN THE ACTIVE SITE OF A CLASS MU GLUTATHIONE TRANSFERASE

Authors :   G. Xiao, X. Ji, R. N. Armstrong, G. L. Gilliland

Date :   26 Jan 96 (Deposition) - 08 Nov 96 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.75

Chains :   Asym./Biol. Unit : A,B

Keywords :   Glutathione Transferase, Isoenzyme 3-3, T13S Mutant, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Xiao, S. Liu, X. Ji, W. W. Johnson, J. Chen, J. F. Parsons, W. J. Stevens, G. L. Gilliland, R. N. Armstrong
First-Sphere And Second-Sphere Electrostatic Effects In The Active Site Of A Class Mu Gluthathione Transferase.
Biochemistry V. 35 4753 1996
PubMed-ID: 8664265 | Reference-DOI: 10.1021/BI960189K
(for further references see the PDB file header)

Molecule 1 - MU CLASS GLUTATHIONE S-TRANSFERASE OF ISOENZYME 3-3
	Chains	:	A, B
	EC Number	:	2.5.1.18
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Gene	:	CDNA INSERT OF CLONE PGT33MX
	Expression System Plasmid	:	PGT33MXT13S
	Expression System Strain	:	M5219
	Expression System Taxid	:	562
	Gene	:	CDNA INSERT OF CLONE PGT33MX
	Mutation	:	YES
	Organ	:	LIVER
	Organism Common	:	BLACK RAT
	Organism Scientific	:	RATTUS RATTUS
	Organism Taxid	:	10117
	Synonym	:	RAT GST

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 5)

No.	Name	Count	Type	Full Name
1	GPS	2	Ligand/Ion	L-GAMMA-GLUTAMYL-S-[(9S,10S)-10-HYDROXY-9,10-DIHYDROPHENANTHREN-9-YL]-L-CYSTEINYLGLYCINE
2	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:6 , TRP A:7 , TRP A:45 , LYS A:49 , ASN A:58 , LEU A:59 , GLN A:71 , SER A:72 , ARG A:107 , ILE A:111 , ASP B:105 , HOH A:221 , HOH B:221 , HOH A:232 , HOH A:237 , HOH A:242 , HOH B:257 , HOH A:266 , HOH A:319 , HOH A:342 , HOH A:417 , HOH A:422	BINDING SITE FOR RESIDUE GPS A 220
2	AC2	SOFTWARE	ASP A:105 , TYR B:6 , TRP B:7 , GLY B:11 , LEU B:12 , ARG B:42 , TRP B:45 , LYS B:49 , ASN B:58 , LEU B:59 , GLN B:71 , SER B:72 , ILE B:111 , SO4 A:218 , HOH B:220 , HOH B:228 , HOH B:229 , HOH B:247 , HOH B:276 , HOH B:285 , HOH B:329 , HOH A:333 , HOH B:387 , HOH B:442 , HOH B:468 , HOH B:471	BINDING SITE FOR RESIDUE GPS B 219
3	AC3	SOFTWARE	ASP A:105 , GLN A:109 , GPS B:219 , HOH A:268	BINDING SITE FOR RESIDUE SO4 A 218
4	AC4	SOFTWARE	ARG B:186 , HOH B:310 , HOH B:311 , HOH B:355 , HOH B:467	BINDING SITE FOR RESIDUE SO4 B 218
5	AC5	SOFTWARE	SER A:199 , ARG A:201 , HOH A:248 , HOH A:312	BINDING SITE FOR RESIDUE SO4 A 219

(no "SS Bond" information available for 6GSV)

Asymmetric/Biological Unit

No.	Residues
1	Ala A:37	-	Pro A:38
2	Leu A:59	-	Pro A:60
3	Thr A:205	-	Pro A:206
4	Ala B:37	-	Pro B:38
5	Leu B:59	-	Pro B:60
6	Thr B:205	-	Pro B:206

(no "SAP(SNP)/Variant" information available for 6GSV)

(no "PROSITE Motif" information available for 6GSV)

(no "Exon" information available for 6GSV)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d6gsva2 A:1-84 Class mu GST                                                         d6gsva1 A:85-217 Class mu GST                                                                                                         SCOP domains
               CATH domains 6gsvA01 A:1-85,A:191-217 Glutaredoxin                                                6gsvA02 A:86-190  [code=1.20.1050.10, no name defined]                                                   6gsvA01 A:1-85,A:191-217    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhh....eeeeee..........hhhh..............eeee..eeee.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh........hhhhhhhhhhhh.hhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 6gsv A   1 PMILGYWNVRGLSHPIRLLLEYTDSSYEEKRYAMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGSRKITQSNAIMRYLARKHHLCGETEEERIRADIVENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPWFAGDKVTYVDFLAYDILDQYHIFEPKCLDAFPNLKDFLARFEGLKKISAYMKSSRYLSTPIFSKLAQWSNK 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Chain B from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d6gsvb2 B:1-84 Class mu GST                                                         d6gsvb1 B:85-217 Class mu GST                                                                                                         SCOP domains
               CATH domains 6gsvB01 B:1-85,B:191-217 Glutaredoxin                                                6gsvB02 B:86-190  [code=1.20.1050.10, no name defined]                                                   6gsvB01 B:1-85,B:191-217    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhh....eeeeee..........hhhh..............eeee..eeee.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh........hhhhhhhhhhh..hhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 6gsv B   1 PMILGYWNVRGLSHPIRLLLEYTDSSYEEKRYAMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGSRKITQSNAIMRYLARKHHLCGETEEERIRADIVENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPWFAGDKVTYVDFLAYDILDQYHIFEPKCLDAFPNLKDFLARFEGLKKISAYMKSSRYLSTPIFSKLAQWSNK 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Glutaredoxin (620)

Homologous Superfamily: Glutaredoxin (617)

Black rat (Rattus rattus) (10)

1a	6gsvA01	A:1-85,A:191-217
1b	6gsvB01	B:1-85,B:191-217

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 (267)

Homologous Superfamily: [code=1.20.1050.10, no name defined] (249)

Black rat (Rattus rattus) (10)

2a	6gsvA02	A:86-190
2b	6gsvB02	B:86-190

(no "Pfam Domain" information available for 6GSV)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Ala A:37 - Pro A:38	[ RasMol ]
		Ala B:37 - Pro B:38	[ RasMol ]
		Leu A:59 - Pro A:60	[ RasMol ]
		Leu B:59 - Pro B:60	[ RasMol ]
		Thr A:205 - Pro A:206	[ RasMol ]
		Thr B:205 - Pro B:206	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

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