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(-) Description

Title :  REACTION COORDINATE MOTION IN AN SNAR REACTION CATALYZED BY GLUTATHIONE TRANSFERASE
 
Authors :  X. Ji, R. N. Armstrong, G. L. Gilliland
Date :  20 Jul 93  (Deposition) - 31 Oct 93  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glutathione Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Ji, R. N. Armstrong, G. L. Gilliland
Snapshots Along The Reaction Coordinate Of An Snar Reaction Catalyzed By Glutathione Transferase.
Biochemistry V. 32 12949 1993
PubMed-ID: 8241147  |  Reference-DOI: 10.1021/BI00211A001
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE
    Chains: A, B
    EC Number: 2.5.1.18
    Engineered: YES
    Organism Common: BLACK RAT
    Organism Scientific: RATTUS RATTUS
    Organism Taxid: 10117

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1GTD2Ligand/Ion1-(S-GLUTATHIONYL)-2,4,6-TRINITROCYCLOHEXA-2,5-DIENE
2SO46Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:81 , CYS A:86 , HOH A:249 , HOH A:292 , HOH A:376 , HOH A:384 , HOH A:393 , HOH A:418 , ARG B:93BINDING SITE FOR RESIDUE SO4 A 218
2AC2SOFTWAREARG A:67BINDING SITE FOR RESIDUE SO4 A 219
3AC3SOFTWARELYS A:49 , PHE A:50 , HOH A:416BINDING SITE FOR RESIDUE SO4 A 220
4AC4SOFTWARESER A:199 , ARG A:201 , HOH A:398BINDING SITE FOR RESIDUE SO4 A 221
5AC5SOFTWARESER B:199 , ARG B:201 , HOH B:244 , HOH B:260 , HOH B:347BINDING SITE FOR RESIDUE SO4 B 218
6AC6SOFTWARELYS A:121 , HOH A:321 , ARG B:186 , HOH B:279BINDING SITE FOR RESIDUE SO4 B 219
7AC7SOFTWARETYR A:6 , TRP A:7 , GLY A:11 , LEU A:12 , ARG A:42 , TRP A:45 , LYS A:49 , ASN A:58 , LEU A:59 , PRO A:60 , GLN A:71 , SER A:72 , ARG A:107 , ILE A:111 , TYR A:115 , PHE A:208 , SER A:209 , HOH A:224 , HOH A:226 , HOH A:243 , HOH A:273 , HOH A:314 , HOH A:375 , HOH A:378 , ASP B:105BINDING SITE FOR RESIDUE GTD A 222
8AC8SOFTWAREASP A:105 , HOH A:232 , TYR B:6 , TRP B:7 , GLY B:11 , TRP B:45 , LYS B:49 , ASN B:58 , LEU B:59 , PRO B:60 , GLN B:71 , SER B:72 , ARG B:107 , ILE B:111 , TYR B:115 , PHE B:208 , HOH B:221 , HOH B:225 , HOH B:263 , HOH B:280 , HOH B:330 , HOH B:348BINDING SITE FOR RESIDUE GTD B 220

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4GST)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Ala A:37 -Pro A:38
2Leu A:59 -Pro A:60
3Thr A:205 -Pro A:206
4Ala B:37 -Pro B:38
5Leu B:59 -Pro B:60
6Thr B:205 -Pro B:206

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GST)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GST)

(-) Exons   (0, 0)

(no "Exon" information available for 4GST)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d4gsta2 A:1-84 Class mu GST                                                         d4gsta1 A:85-217 Class mu GST                                                                                                         SCOP domains
               CATH domains 4gstA01 A:1-85,A:191-217 Glutaredoxin                                                4gstA02 A:86-190  [code=1.20.1050.10, no name defined]                                                   4gstA01 A:1-85,A:191-217    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhh....eeeeee..........hhhh..............eeee..eeee.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh........hhhhhhhhhhh..hhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gst A   1 PMILGYWNVRGLTHPIRLLLEYTDSSYEEKRYAMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGSRKITQSNAIMRYLARKHHLCGETEEERIRADIVENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPWFAGDKVTYVDFLAYDILDQYHIFEPKCLDAFPNLKDFLARFEGLKKISAYMKSSRYLSTPIFSKLAQWSNK 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       


Chain B from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d4gstb2 B:1-84 Class mu GST                                                         d4gstb1 B:85-217 Class mu GST                                                                                                         SCOP domains
               CATH domains 4gstB01 B:1-85,B:191-217 Glutaredoxin                                                4gstB02 B:86-190  [code=1.20.1050.10, no name defined]                                                   4gstB01 B:1-85,B:191-217    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhh....eeeeee..........hhhhhhh...........eeee..eeee.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhh........hhhhhhhhhhh..hhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4gst B   1 PMILGYWNVRGLTHPIRLLLEYTDSSYEEKRYAMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGSRKITQSNAIMRYLARKHHLCGETEEERIRADIVENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPWFAGDKVTYVDFLAYDILDQYHIFEPKCLDAFPNLKDFLARFEGLKKISAYMKSSRYLSTPIFSKLAQWSNK 217
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GST)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:37 - Pro A:38   [ RasMol ]  
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        GSTM1_RAT | P04905: 1gsb 1gsc 1mtc 2gst 3fyg 3gst 5fwg 5gst 6gst 6gsu 6gsv 6gsw 6gsx 6gsy

(-) Related Entries Specified in the PDB File

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