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6GSV
Asym. Unit
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Asym.Unit (91 KB)
Biol.Unit 1 (86 KB)
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(1)
Title
:
FIRST-SPHERE AND SECOND-SPHERE ELECTROSTATIC EFFECTS IN THE ACTIVE SITE OF A CLASS MU GLUTATHIONE TRANSFERASE
Authors
:
G. Xiao, X. Ji, R. N. Armstrong, G. L. Gilliland
Date
:
26 Jan 96 (Deposition) - 08 Nov 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Glutathione Transferase, Isoenzyme 3-3, T13S Mutant, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Xiao, S. Liu, X. Ji, W. W. Johnson, J. Chen, J. F. Parsons, W. J. Stevens, G. L. Gilliland, R. N. Armstrong
First-Sphere And Second-Sphere Electrostatic Effects In The Active Site Of A Class Mu Gluthathione Transferase.
Biochemistry V. 35 4753 1996
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: L-GAMMA-GLUTAMYL-S-[(9S,10S)-10-HY... (GPSa)
1b: L-GAMMA-GLUTAMYL-S-[(9S,10S)-10-HY... (GPSb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
View:
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No.
Name
Count
Type
Full Name
1
GPS
2
Ligand/Ion
L-GAMMA-GLUTAMYL-S-[(9S,10S)-10-HYDROXY-9,10-DIHYDROPHENANTHREN-9-YL]-L-CYSTEINYLGLYCINE
2
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:6 , TRP A:7 , TRP A:45 , LYS A:49 , ASN A:58 , LEU A:59 , GLN A:71 , SER A:72 , ARG A:107 , ILE A:111 , ASP B:105 , HOH A:221 , HOH B:221 , HOH A:232 , HOH A:237 , HOH A:242 , HOH B:257 , HOH A:266 , HOH A:319 , HOH A:342 , HOH A:417 , HOH A:422
BINDING SITE FOR RESIDUE GPS A 220
2
AC2
SOFTWARE
ASP A:105 , TYR B:6 , TRP B:7 , GLY B:11 , LEU B:12 , ARG B:42 , TRP B:45 , LYS B:49 , ASN B:58 , LEU B:59 , GLN B:71 , SER B:72 , ILE B:111 , SO4 A:218 , HOH B:220 , HOH B:228 , HOH B:229 , HOH B:247 , HOH B:276 , HOH B:285 , HOH B:329 , HOH A:333 , HOH B:387 , HOH B:442 , HOH B:468 , HOH B:471
BINDING SITE FOR RESIDUE GPS B 219
3
AC3
SOFTWARE
ASP A:105 , GLN A:109 , GPS B:219 , HOH A:268
BINDING SITE FOR RESIDUE SO4 A 218
4
AC4
SOFTWARE
ARG B:186 , HOH B:310 , HOH B:311 , HOH B:355 , HOH B:467
BINDING SITE FOR RESIDUE SO4 B 218
5
AC5
SOFTWARE
SER A:199 , ARG A:201 , HOH A:248 , HOH A:312
BINDING SITE FOR RESIDUE SO4 A 219
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d6gsva1 (A:85-217)
1b: SCOP_d6gsvb1 (B:85-217)
2a: SCOP_d6gsva2 (A:1-84)
2b: SCOP_d6gsvb2 (B:1-84)
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Protein Domains
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(
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class mu GST
(33)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(16)
1a
d6gsva1
A:85-217
1b
d6gsvb1
B:85-217
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class mu GST
(33)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(16)
2a
d6gsva2
A:1-84
2b
d6gsvb2
B:1-84
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_6gsvA01 (A:1-85,A:191-217)
1b: CATH_6gsvB01 (B:1-85,B:191-217)
2a: CATH_6gsvA02 (A:86-190)
2b: CATH_6gsvB02 (B:86-190)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Black rat (Rattus rattus)
(10)
1a
6gsvA01
A:1-85,A:191-217
1b
6gsvB01
B:1-85,B:191-217
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Black rat (Rattus rattus)
(10)
2a
6gsvA02
A:86-190
2b
6gsvB02
B:86-190
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (91 KB)
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