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(-) Description

Title :  TETRA-(5-FLUOROTRYPTOPHANYL)-GLUTATHIONE TRANSFERASE
 
Authors :  J. F. Parsons, G. Xiao, R. N. Armstrong, G. L. Gilliland
Date :  08 Nov 97  (Deposition) - 27 Jan 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glutathione Transferase, Unnatural Amino Acid, 5- Fluorotryptophan, Three-Dimensional Structure (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. F. Parsons, G. Xiao, G. L. Gilliland, R. N. Armstrong
Enzymes Harboring Unnatural Amino Acids: Mechanistic And Structural Analysis Of The Enhanced Catalytic Activity Of A Glutathione Transferase Containing 5-Fluorotryptophan.
Biochemistry V. 37 6286 1998
PubMed-ID: 9572843  |  Reference-DOI: 10.1021/BI980219E
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TETRA-(5-FLUOROTRYPTOPHANYL)-GLUTATHIONE TRANSFERASE MU CLASS
    Cell Line: BL21
    Chains: A, B
    EC Number: 2.5.1.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Gene: CDNA INSERT OF 3-3 (M1-1) ENZYME
    Expression System Plasmid: PSW1GST33
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CDNA INSERT OF 3-3 (M1-1) ENZY
    Mutation: YES
    Organ: LIVER
    Organism Common: NORWAY RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: RAT MU CLASS GST, RAT M1-1 GST

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1FTR8Mod. Amino AcidFLUOROTRYPTOPHANE
2GPR2Ligand/Ion(9R,10R)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:6 , FTR A:7 , GLY A:11 , LEU A:12 , FTR A:45 , LYS A:49 , ASN A:58 , LEU A:59 , PRO A:60 , GLN A:71 , SER A:72 , MET A:104 , ILE A:111 , SER A:209 , HOH A:530 , HOH A:627 , HOH A:745 , HOH A:759 , HOH A:777 , HOH A:779 , ASP B:105BINDING SITE FOR RESIDUE GPR A 218
2AC2SOFTWAREASP A:105 , TYR B:6 , FTR B:7 , LEU B:12 , ARG B:42 , FTR B:45 , LYS B:49 , ASN B:58 , LEU B:59 , PRO B:60 , GLN B:71 , SER B:72 , ILE B:111 , HOH B:526 , HOH B:598 , HOH B:637 , HOH B:682 , HOH B:813BINDING SITE FOR RESIDUE GPR B 218
3GPSUNKNOWNTYR A:6 , FTR A:7 , VAL A:9 , LEU A:12 , ILE A:111 , TYR A:115 , SER A:209ACTIVE SITE DEFINED LARGELY BY THESE RESIDUES.

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FWG)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Ala A:37 -Pro A:38
2Leu A:59 -Pro A:60
3Thr A:205 -Pro A:206
4Ala B:37 -Pro B:38
5Leu B:59 -Pro B:60
6Thr B:205 -Pro B:206

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FWG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FWG)

(-) Exons   (0, 0)

(no "Exon" information available for 5FWG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d5fwga2 A:1-84 Class mu GST                                                         d5fwga1 A:85-217 Class mu GST                                                                                                         SCOP domains
               CATH domains 5fwgA01 A:1-85,A:191-213 Glutaredoxin                                                5fwgA02 A:86-190  [code=1.20.1050.10, no name defined]                                                   5fwgA01 Glutaredoxin   ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhh....eeeeee..........hhhh..............eeee..eeee.hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhh.............hhhhhhhhhhhhhhh........hhhhhhhhhhh..hhhhhh..................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwg A   1 PMILGYwNVRGLTHPIRLLLEYTDSSYEEKRYAMGDAPDYDRSQwLNEKFKLGLDFPNLPYLIDGSRKITQSNAIMRYLARKHHLCGETEEERIRADIVENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPwFAGDKVTYVDFLAYDILDQYHIFEPKCLDAFPNLKDFLARFEGLKKISAYMKSSRYLSTPIFSKLAQwSNK 217
                                  | 10        20        30        40    |   50        60        70        80        90       100       110       120       130       140     | 150       160       170       180       190       200       210   |   
                                  7-FTR                                45-FTR                                                                                              146-FTR                                                             214-FTR


Chain B from PDB  Type:PROTEIN  Length:217
                                                                                                                                                                                                                                                         
               SCOP domains d5fwgb2 B:1-84 Class mu GST                                                         d5fwgb1 B:85-217 Class mu GST                                                                                                         SCOP domains
               CATH domains 5fwgB01 B:1-85,B:191-213 Glutaredoxin                                                5fwgB02 B:86-190  [code=1.20.1050.10, no name defined]                                                   5fwgB01 Glutaredoxin   ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee......hhhhhhhhh....eeeeee..........hhhh..hhh.........eeee..eeee.hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhhhhh............hhhhhhhhhhhhhhhh........hhhhhhhhhhh..hhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fwg B   1 PMILGYwNVRGLTHPIRLLLEYTDSSYEEKRYAMGDAPDYDRSQwLNEKFKLGLDFPNLPYLIDGSRKITQSNAIMRYLARKHHLCGETEEERIRADIVENQVMDNRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYSEFLGKRPwFAGDKVTYVDFLAYDILDQYHIFEPKCLDAFPNLKDFLARFEGLKKISAYMKSSRYLSTPIFSKLAQwSNK 217
                                  | 10        20        30        40    |   50        60        70        80        90       100       110       120       130       140     | 150       160       170       180       190       200       210   |   
                                  7-FTR                                45-FTR                                                                                              146-FTR                                                             214-FTR
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FWG)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:37 - Pro A:38   [ RasMol ]  
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        GSTM1_RAT | P04905: 1gsb 1gsc 1mtc 2gst 3fyg 3gst 4gst 5gst 6gst 6gsu 6gsv 6gsw 6gsx 6gsy

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