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(-) Description

Title :  HORSE SERUM ALBUMIN (ESA) IN COMPLEX WITH CETIRIZINE
 
Authors :  K. B. Handing, I. G. Shabalin, K. A. Majorek, M. Chruszcz, S. C. Almo, W. M York Structural Genomics Research Consortium (Nysgrc)
Date :  14 Sep 15  (Deposition) - 23 Dec 15  (Release) - 09 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A
Keywords :  Albumin, Cetirizine, Esa, Nysgrc, Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. B. Handing, I. G. Shabalin, K. Szlachta, K. A. Majorek, W. Minor
Crystal Structure Of Equine Serum Albumin In Complex With Cetirizine Reveals A Novel Drug Binding Site.
Mol. Immunol. V. 71 143 2016
PubMed-ID: 26896718  |  Reference-DOI: 10.1016/J.MOLIMM.2016.02.003

(-) Compounds

Molecule 1 - SERUM ALBUMIN
    Chains: A
    Mutation: YES
    Organism Common: HORSE
    Organism Scientific: EQUUS CABALLUS
    Organism Taxid: 9796

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 17)

Asymmetric/Biological Unit (5, 17)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION
2CZE1Ligand/Ion(2-{4-[(S)-(4-CHLOROPHENYL)(PHENYL)METHYL]PIPERAZIN-1-YL}ETHOXY)ACETIC ACID
3LCR1Ligand/Ion(2-{4-[(R)-(4-CHLOROPHENYL)(PHENYL)METHYL]PIPERAZIN-1-YL}ETHOXY)ACETIC ACID
4PG47Ligand/IonTETRAETHYLENE GLYCOL
5SO44Ligand/IonSULFATE ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:465 , ASN A:549 , LEU A:574 , SER A:577 , SER A:578binding site for residue PG4 A 601
02AC2SOFTWARETYR A:149 , LEU A:237 , HIS A:241 , ARG A:256 , SER A:286 , ALA A:290binding site for residue PG4 A 602
03AC3SOFTWAREGLU A:100 , LEU A:393 , LYS A:544binding site for residue PG4 A 603
04AC4SOFTWAREARG A:427 , LYS A:431binding site for residue PG4 A 604
05AC5SOFTWARELEU A:66 , PHE A:70 , ASP A:248 , LEU A:249 , LEU A:250 , GLU A:251binding site for residue PG4 A 605
06AC6SOFTWARELEU A:14 , GLY A:15 , GLU A:16 , LYS A:17 , HIS A:18binding site for residue PG4 A 606
07AC7SOFTWARECYS A:264 , GLU A:265 , GLN A:267 , ASP A:268 , SER A:269binding site for residue PG4 A 607
08AC8SOFTWARELYS A:180 , ALA A:183 , ARG A:187binding site for residue SO4 A 608
09AC9SOFTWARELYS A:412 , THR A:539 , LYS A:540 , GLU A:541 , HOH A:828binding site for residue SO4 A 609
10AD1SOFTWAREALA A:303 , LEU A:304 , ALA A:305 , PHE A:373binding site for residue SO4 A 610
11AD2SOFTWARELYS A:499 , LYS A:533 , HOH A:759 , HOH A:792binding site for residue SO4 A 611
12AD3SOFTWARELYS A:17 , LEU A:24 , ASP A:131 , LEU A:154 , HIS A:337binding site for residue LCR A 612
13AD4SOFTWAREARG A:208 , GLY A:327 , LYS A:350 , GLU A:353 , HOH A:844binding site for residue CZE A 613
14AD5SOFTWAREHIS A:145 , PRO A:146 , TYR A:147 , SER A:192 , HOH A:770binding site for residue CL A 614
15AD6SOFTWARECYS A:101 , THR A:104 , LYS A:544 , HOH A:790 , HOH A:878binding site for residue CL A 615
16AD7SOFTWAREGLU A:207 , ARG A:208binding site for residue CL A 616
17AD8SOFTWARELYS A:221binding site for residue CL A 617

(-) SS Bonds  (17, 17)

Asymmetric/Biological Unit
No.Residues
1A:53 -A:62
2A:75 -A:91
3A:90 -A:101
4A:123 -A:168
5A:167 -A:176
6A:199 -A:245
7A:244 -A:252
8A:264 -A:278
9A:277 -A:288
10A:315 -A:360
11A:359 -A:368
12A:391 -A:437
13A:436 -A:447
14A:460 -A:476
15A:475 -A:486
16A:513 -A:558
17A:557 -A:566

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:95 -Pro A:96

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DQF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DQF)

(-) Exons   (0, 0)

(no "Exon" information available for 5DQF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:580
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhh............hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhh...........hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dqf A   4 KSEIAHRFNDLGEKHFKGLVLVAFSQYLQQCPFEDHVKLVNEVTEFAKKCAADESAENCDKSLHTLFGDKLCTVATLRATYGELADCCEKQEPERNECFLTHKDDHPNLPKLKPEPDAQCAAFQEDPDKFLGKYLYEVARRHPYFYGPELLFHAEEYKADFTECCPADDKLACLIPKLDALKERILLSSAKERLKCSSFQNFGERAVKAWSVARLSQKFPKADFAEVSKIVTDLTKVHKECCHGDLLECADDRADLAKYICEHQDSISGKLKACCDKPLLQKSHCIAEVKEDDLPSDLPALAADFAEDKEICKHYKDAKDVFLGTFLYEYSRRHPDYSVSLLLRIAKTYEATLEKCCAEADPPACYRTVFDQFTPLVEEPKSLVKKNCDLFEEVGEYDFQNALIVRYTKKAPQVSTPTLVEIGRTLGKVGSRCCKLPESERLPCSENHLALALNRLCVLHEKTPVSEKITKCCTDSLAERRPCFSALELDEGYVPKEFKAETFTFHADICTLPEDEKQIKKQSALAELVKHKPKATKEQLKTVLGNFSAFVAKCCGAEDKEACFAEEGPKLVASSQLALA 583
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DQF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DQF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DQF)

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ALBU_HORSE | P35747: 3v08 4f5t 4f5u 4j2v 4ot2 4zbq 4zbr 5dby 5hoz 5id9 5iih 5iiu 5iix 5ij5 5ije 5v0v

(-) Related Entries Specified in the PDB File

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