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(-) Description

Title :  TETRAGONAL THERMOLYSIN (295 K) IN THE PRESENCE OF 50% XYLOSE
 
Authors :  D. Juers
Date :  30 Jan 17  (Deposition) - 22 Feb 17  (Release) - 12 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Keywords :  Zinc Protease, Alpha/Beta, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. H. Juers, C. A. Farley, C. Saxby, R. Cotter, J. Cahn, C. Holton-Burke
Tetragonal Thermolysin (295 K) In The Presence Of 50% Xylos
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - THERMOLYSIN
    ChainsA
    EC Number3.4.24.27
    EngineeredYES
    Expression SystemBACILLUS THERMOPROTEOLYTICUS
    Expression System Taxid1427
    GeneNPR
    Organism ScientificBACILLUS THERMOPROTEOLYTICUS
    Organism Taxid1427
    SynonymTHERMOSTABLE NEUTRAL PROTEINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 20)

Asymmetric Unit (4, 20)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2CL4Ligand/IonCHLORIDE ION
3XYP5Ligand/IonBETA-D-XYLOPYRANOSE
4ZN8Ligand/IonZINC ION
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CL-1Ligand/IonCHLORIDE ION
3XYP5Ligand/IonBETA-D-XYLOPYRANOSE
4ZN-1Ligand/IonZINC ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:138 , GLU A:177 , ASP A:185 , GLU A:187 , GLU A:190 , ZN A:318 , HOH A:487binding site for residue CA A 317
02AC2SOFTWAREGLU A:177 , ASN A:183 , ASP A:185 , GLU A:190 , CA A:317 , HOH A:423 , HOH A:427binding site for residue ZN A 318
03AC3SOFTWAREASP A:57 , ASP A:59 , GLN A:61 , HOH A:410 , HOH A:451 , HOH A:586binding site for residue CA A 319
04AC4SOFTWARETYR A:193 , THR A:194 , ILE A:197 , ASP A:200 , HOH A:456 , HOH A:595binding site for residue CA A 320
05AC5SOFTWAREHIS A:142 , HIS A:146 , GLU A:166 , ZN A:322 , ZN A:323 , HOH A:513binding site for residue ZN A 321
06AC6SOFTWARETYR A:157 , GLU A:166 , HIS A:231 , ZN A:321 , ZN A:323 , HOH A:513binding site for residue ZN A 322
07AC7SOFTWAREGLU A:143 , ZN A:321 , ZN A:322 , HOH A:403 , HOH A:446 , HOH A:513binding site for residue ZN A 323
08AC8SOFTWAREASP A:226 , HIS A:231binding site for residue ZN A 324
09AC9SOFTWARELYS A:239 , ZN A:332 , CL A:341 , CL A:342 , HOH A:576binding site for residue ZN A 331
10AD1SOFTWAREHIS A:250 , ZN A:331 , CL A:343 , CL A:344 , HOH A:576binding site for residue ZN A 332
11AD2SOFTWAREASP A:213 , HOH A:461 , HOH A:472 , HOH A:500 , HOH A:623 , HOH A:637binding site for residue ZN A 334
12AD3SOFTWAREZN A:331binding site for residue CL A 341
13AD4SOFTWARESER A:206 , LYS A:239 , ZN A:331binding site for residue CL A 342
14AD5SOFTWAREARG A:47 , LYS A:239 , HIS A:250 , ZN A:332binding site for residue CL A 343
15AD6SOFTWARELYS A:45 , ARG A:47 , HIS A:250 , TYR A:251 , ZN A:332binding site for residue CL A 344
16AD7SOFTWAREASN A:159 , GLU A:160 , ARG A:220 , TYR A:221 , THR A:222 , GLY A:228 , ASN A:233 , HOH A:449binding site for residue XYP A 352
17AD8SOFTWAREASP A:150 , TRP A:186 , SER A:206 , TYR A:242 , HOH A:406 , HOH A:419 , HOH A:447 , HOH A:468binding site for residue XYP A 353
18AD9SOFTWARETYR A:66 , HIS A:216 , SER A:218 , TYR A:251 , HOH A:525 , HOH A:527binding site for residue XYP A 354
19AE1SOFTWARELEU A:175 , PHE A:178 , ARG A:260 , ASP A:261 , GLN A:273 , HOH A:415binding site for residue XYP A 355
20AE2SOFTWAREILE A:1 , LEU A:54 , ALA A:209 , GLY A:212 , HOH A:401 , HOH A:402binding site for residue XYP A 357

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UN3)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:50 -Pro A:51

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UN3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UN3)

(-) Exons   (0, 0)

(no "Exon" information available for 5UN3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.....eeeeeeee...ee.ee......eeeee.........ee.ee...ee.hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee........eee....eee.........hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh......ee..............ee..hhhhhh...hhhhh...hhhhhhhhhhhhhhhhhhhhhhhheee..eee...hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5un3 A   1 ITGTSTVGVGRGVLGDQKNINTTYSTYYYLQDNTRGNGIFTYDAKYRTTLPGSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKNVHNRLSYDGNNAAIRSSVHYSQGYNNAFWNGSQMVYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKAAYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQLRAAAVQSATDLYGSTSQEVASVKQAFDAVGVK 316
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UN3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UN3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UN3)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        THER_BACTH | P008001fj3 1fjo 1fjq 1fjt 1fju 1fjv 1fjw 1gxw 1hyt 1kei 1kjo 1kjp 1kkk 1kl6 1kr6 1kro 1ks7 1kto 1l3f 1lna 1lnb 1lnc 1lnd 1lne 1lnf 1os0 1pe5 1pe7 1pe8 1qf0 1qf1 1qf2 1thl 1tli 1tlp 1tlx 1tmn 1trl 1y3g 1z9g 1zdp 2a7g 2g4z 2tli 2tlx 2tmn 2whz 2wi0 3dnz 3do0 3do1 3do2 3eim 3f28 3f2p 3fb0 3fbo 3fcq 3fgd 3flf 3for 3fv4 3fvp 3fxp 3fxs 3ls7 3ms3 3msa 3msf 3msn 3n21 3nn7 3p7p 3p7q 3p7r 3p7s 3p7t 3p7u 3p7v 3p7w 3qgo 3qh1 3qh5 3ssb 3t2h 3t2i 3t2j 3t73 3t74 3t87 3t8c 3t8d 3t8f 3t8g 3t8h 3tli 3tmn 3zi6 4d91 4d9w 4h57 4mtw 4mwp 4mxj 4mzn 4n4e 4n5p 4n66 4oi5 4ow3 4tli 4tln 4tmn 4tnl 5a3y 5dpe 5dpf 5fsj 5fsp 5fss 5fxn 5js3 5jss 5jt9 5jvi 5jxn 5k7t 5l3u 5l41 5l8p 5lif 5lwd 5mnr 5n2t 5n2x 5n2z 5n31 5n34 5n3v 5n3y 5tli 5tln 5tmn 5uu7 5uu8 5uu9 5uua 5uub 5uuc 5uud 5uue 6tli 6tmn 7tli 7tln 8tli 8tln

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5UN3)