PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
5UN3
Asym. Unit
Info
Asym.Unit (112 KB)
Biol.Unit 1 (106 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
TETRAGONAL THERMOLYSIN (295 K) IN THE PRESENCE OF 50% XYLOSE
Authors
:
D. Juers
Date
:
30 Jan 17 (Deposition) - 22 Feb 17 (Release) - 12 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Zinc Protease, Alpha/Beta, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. H. Juers, C. A. Farley, C. Saxby, R. Cotter, J. Cahn, C. Holton-Burke
Tetragonal Thermolysin (295 K) In The Presence Of 50% Xylos
To Be Published
[
close entry info
]
Hetero Components
(4, 20)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: BETA-D-XYLOPYRANOSE (XYPa)
3b: BETA-D-XYLOPYRANOSE (XYPb)
3c: BETA-D-XYLOPYRANOSE (XYPc)
3d: BETA-D-XYLOPYRANOSE (XYPd)
3e: BETA-D-XYLOPYRANOSE (XYPe)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
2
CL
4
Ligand/Ion
CHLORIDE ION
3
XYP
5
Ligand/Ion
BETA-D-XYLOPYRANOSE
4
ZN
8
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:138 , GLU A:177 , ASP A:185 , GLU A:187 , GLU A:190 , ZN A:318 , HOH A:487
binding site for residue CA A 317
02
AC2
SOFTWARE
GLU A:177 , ASN A:183 , ASP A:185 , GLU A:190 , CA A:317 , HOH A:423 , HOH A:427
binding site for residue ZN A 318
03
AC3
SOFTWARE
ASP A:57 , ASP A:59 , GLN A:61 , HOH A:410 , HOH A:451 , HOH A:586
binding site for residue CA A 319
04
AC4
SOFTWARE
TYR A:193 , THR A:194 , ILE A:197 , ASP A:200 , HOH A:456 , HOH A:595
binding site for residue CA A 320
05
AC5
SOFTWARE
HIS A:142 , HIS A:146 , GLU A:166 , ZN A:322 , ZN A:323 , HOH A:513
binding site for residue ZN A 321
06
AC6
SOFTWARE
TYR A:157 , GLU A:166 , HIS A:231 , ZN A:321 , ZN A:323 , HOH A:513
binding site for residue ZN A 322
07
AC7
SOFTWARE
GLU A:143 , ZN A:321 , ZN A:322 , HOH A:403 , HOH A:446 , HOH A:513
binding site for residue ZN A 323
08
AC8
SOFTWARE
ASP A:226 , HIS A:231
binding site for residue ZN A 324
09
AC9
SOFTWARE
LYS A:239 , ZN A:332 , CL A:341 , CL A:342 , HOH A:576
binding site for residue ZN A 331
10
AD1
SOFTWARE
HIS A:250 , ZN A:331 , CL A:343 , CL A:344 , HOH A:576
binding site for residue ZN A 332
11
AD2
SOFTWARE
ASP A:213 , HOH A:461 , HOH A:472 , HOH A:500 , HOH A:623 , HOH A:637
binding site for residue ZN A 334
12
AD3
SOFTWARE
ZN A:331
binding site for residue CL A 341
13
AD4
SOFTWARE
SER A:206 , LYS A:239 , ZN A:331
binding site for residue CL A 342
14
AD5
SOFTWARE
ARG A:47 , LYS A:239 , HIS A:250 , ZN A:332
binding site for residue CL A 343
15
AD6
SOFTWARE
LYS A:45 , ARG A:47 , HIS A:250 , TYR A:251 , ZN A:332
binding site for residue CL A 344
16
AD7
SOFTWARE
ASN A:159 , GLU A:160 , ARG A:220 , TYR A:221 , THR A:222 , GLY A:228 , ASN A:233 , HOH A:449
binding site for residue XYP A 352
17
AD8
SOFTWARE
ASP A:150 , TRP A:186 , SER A:206 , TYR A:242 , HOH A:406 , HOH A:419 , HOH A:447 , HOH A:468
binding site for residue XYP A 353
18
AD9
SOFTWARE
TYR A:66 , HIS A:216 , SER A:218 , TYR A:251 , HOH A:525 , HOH A:527
binding site for residue XYP A 354
19
AE1
SOFTWARE
LEU A:175 , PHE A:178 , ARG A:260 , ASP A:261 , GLN A:273 , HOH A:415
binding site for residue XYP A 355
20
AE2
SOFTWARE
ILE A:1 , LEU A:54 , ALA A:209 , GLY A:212 , HOH A:401 , HOH A:402
binding site for residue XYP A 357
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (112 KB)
Header - Asym.Unit
Biol.Unit 1 (106 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5UN3
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help