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(-) Description

Title :  STRUCTURAL COMPARISON SUGGESTS THAT THERMOLYSIN AND RELATED NEUTRAL PROTEASES UNDERGO HINGE-BENDING MOTION DURING CATALYSIS
 
Authors :  D. Tronrud, B. W. Matthews
Date :  01 Sep 93  (Deposition) - 30 Apr 94  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  E
Keywords :  Hydrolase(Metalloproteinase) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. R. Holland, D. E. Tronrud, H. W. Pley, K. M. Flaherty, W. Stark, J. N. Jansonius, D. B. Mckay, B. W. Matthews
Structural Comparison Suggests That Thermolysin And Related Neutral Proteases Undergo Hinge-Bending Motion During Catalysis.
Biochemistry V. 31 11310 1992
PubMed-ID: 1445869  |  Reference-DOI: 10.1021/BI00161A008
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - THERMOLYSIN
    Chains: E
    EC Number: 3.4.24.27
    Organism Scientific: BACILLUS THERMOPROTEOLYTICUS
    Organism Taxid: 1427

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 8)

Asymmetric/Biological Unit (5, 8)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2DMS1Ligand/IonDIMETHYL SULFOXIDE
3LYS1Mod. Amino AcidLYSINE
4VAL1Mod. Amino AcidVALINE
5ZN1Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN E:112 , ALA E:113 , GLU E:143 , ARG E:203 , HIS E:231 , HOH E:392 , LYS E:1323BINDING SITE FOR RESIDUE VAL E 1322
2AC2SOFTWAREASN E:111 , ASN E:112 , VAL E:1322BINDING SITE FOR RESIDUE LYS E 1323
3AC3SOFTWAREASP E:138 , GLU E:177 , ASP E:185 , GLU E:187 , GLU E:190 , HOH E:346BINDING SITE FOR RESIDUE CA E 317
4AC4SOFTWAREGLU E:177 , ASN E:183 , ASP E:185 , GLU E:190 , HOH E:353 , HOH E:475BINDING SITE FOR RESIDUE CA E 318
5AC5SOFTWAREASP E:57 , ASP E:59 , GLN E:61 , HOH E:419 , HOH E:482 , HOH E:503BINDING SITE FOR RESIDUE CA E 319
6AC6SOFTWARETYR E:193 , THR E:194 , ILE E:197 , ASP E:200 , HOH E:354 , HOH E:480BINDING SITE FOR RESIDUE CA E 320
7AC7SOFTWAREHIS E:142 , HIS E:146 , GLU E:166 , HOH E:392BINDING SITE FOR RESIDUE ZN E 321
8AC8SOFTWARETYR E:66 , SER E:218 , TYR E:251 , HOH E:506BINDING SITE FOR RESIDUE DMS E 324

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 8TLN)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu E:50 -Pro E:51

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 8TLN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 8TLN)

(-) Exons   (0, 0)

(no "Exon" information available for 8TLN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain E from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d8tlne_ E: Thermolysin                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains -----8tlnE01 E:6-154  [code=3.10.170.10, no name defined]                                                                                                 8tlnE02 E:155-315 Neutral Protease Domain 2                                                                                                                      --- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeee....eeeeeeeeee.eee.ee......eeeee........eeeeee...ee..hhhhhhhhhhhhhhhhhhhhhhh............eeeeeee.....eeee...eeee..........hhh.hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh.........hhh...............hhhh.....hhh......hhhh...hhhhhhhhhhhhhh.............hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....hhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                8tln E    1 ITGTSTVGVGRGVLGDQKNINTTYSTYYYLQDNTRGDGIFTYDAKYRTTLPGSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKNVHNRLSYDGNNAAIRSSVHYSQGYNNAFWNGSEMVYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKAAYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQLRAAAVQSATDLYGSTSQEVASVKQAFDAVGVKVK 1323
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310     || 
                                                                                                                                                                                                                                                                                                                                                     316| 
                                                                                                                                                                                                                                                                                                                                                     1322
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 8TLN)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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    Leu E:50 - Pro E:51   [ RasMol ]  
 

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  8tln
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  THER_BACTH | P00800
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        THER_BACTH | P00800: 1fj3 1fjo 1fjq 1fjt 1fju 1fjv 1fjw 1gxw 1hyt 1kei 1kjo 1kjp 1kkk 1kl6 1kr6 1kro 1ks7 1kto 1l3f 1lna 1lnb 1lnc 1lnd 1lne 1lnf 1os0 1pe5 1pe7 1pe8 1qf0 1qf1 1qf2 1thl 1tli 1tlp 1tlx 1tmn 1trl 1y3g 1z9g 1zdp 2a7g 2g4z 2tli 2tlx 2tmn 2whz 2wi0 3dnz 3do0 3do1 3do2 3eim 3f28 3f2p 3fb0 3fbo 3fcq 3fgd 3flf 3for 3fv4 3fvp 3fxp 3fxs 3ls7 3ms3 3msa 3msf 3msn 3n21 3nn7 3p7p 3p7q 3p7r 3p7s 3p7t 3p7u 3p7v 3p7w 3qgo 3qh1 3qh5 3ssb 3t2h 3t2i 3t2j 3t73 3t74 3t87 3t8c 3t8d 3t8f 3t8g 3t8h 3tli 3tmn 3zi6 4d91 4d9w 4h57 4mtw 4mwp 4mxj 4mzn 4n4e 4n5p 4n66 4oi5 4ow3 4tli 4tln 4tmn 4tnl 5a3y 5dpe 5dpf 5fsj 5fsp 5fss 5fxn 5js3 5jss 5jt9 5jvi 5jxn 5k7t 5l3u 5l41 5l8p 5lif 5lwd 5mnr 5n2t 5n2x 5n2z 5n31 5n34 5n3v 5n3y 5tli 5tln 5tmn 5un3 5uu7 5uu8 5uu9 5uua 5uub 5uuc 5uud 5uue 6tli 6tmn 7tli 7tln 8tli

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 8TLN)