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(-) Description

Title :  MICROED STRUCTURE OF THERMOLYSIN AT 2.5 A RESOLUTION
 
Authors :  M. J. De La Cruz, J. Hattne, D. Shi, P. Seidler, J. Rodriguez, F. E. Reye M. R. Sawaya, D. Cascio, D. Eisenberg, T. Gonen
Date :  26 May 16  (Deposition) - 05 Apr 17  (Release) - 12 Apr 17  (Revision)
Method :  ELECTRON CRYSTALLOGRAPHY
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. De La Cruz, J. Hattne, D. Shi, P. Seidler, J. Rodriguez, F. E. Reyes, M. R. Sawaya, D. Cascio, S. C. Weiss, S. K. Kim, C. S. Hinck, A. P. Hinck, G. Calero, D. Eisenberg, T. Gonen
Atomic-Resolution Structures From Fragmented Protein Crystals With The Cryoem Method Microed.
Nat. Methods V. 14 399 2017
PubMed-ID: 28192420  |  Reference-DOI: 10.1038/NMETH.4178

(-) Compounds

Molecule 1 - THERMOLYSIN
    Chains: A
    EC Number: 3.4.24.27
    Organism Scientific: BACILLUS THERMOPROTEOLYTICUS
    Organism Taxid: 1427
    Synonym: THERMOSTABLE NEUTRAL PROTEINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2DMS1Ligand/IonDIMETHYL SULFOXIDE
3IPA1Ligand/IonISOPROPYL ALCOHOL
4ZN1Ligand/IonZINC ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:370 , GLU A:409 , ASP A:417 , GLU A:419 , GLU A:422binding site for residue CA A 601
2AC2SOFTWAREASN A:415 , ASP A:417 , GLU A:422 , ASP A:423binding site for residue CA A 602
3AC3SOFTWAREASP A:289 , ASP A:291 , GLN A:293binding site for residue CA A 603
4AC4SOFTWARETYR A:425 , THR A:426 , ILE A:429 , ASP A:432 , HOH A:705binding site for residue CA A 604
5AC5SOFTWAREHIS A:374 , GLU A:375 , HIS A:378 , TYR A:389 , GLU A:398binding site for residue ZN A 605
6AC6SOFTWAREHIS A:448 , SER A:450 , TYR A:483binding site for residue DMS A 606
7AC7SOFTWAREASN A:344 , GLU A:375 , LEU A:434binding site for residue IPA A 607

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K7T)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:282 -Pro A:283

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K7T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K7T)

(-) Exons   (0, 0)

(no "Exon" information available for 5K7T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.....eeeeeeee...ee.ee......eeeee.........ee.ee...ee...hhhhhhhhhhhhhhhhhhhhhhh...........eeeeeee......eee....eeee........hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh.....ee..............ee..hhhhhh...hhhhh....hhhhhh..hhhhhhhhhhhhhheeee..eeee..hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k7t A 233 ITGTSTVGVGRGVLGDQKNINTTYSTYYYLQDNTRGNGIFTYDAKYRTTLPGSLWADADNQFFASYDAPAVDAHYYAGVTYDYYKNVHNRLSYDGNNAAIRSSVHYSQGYNNAFWNGSQMVYGDGDGQTFIPLSGGIDVVAHELTHAVTDYTAGLIYQNESGAINEAISDIFGTLVEFYANKNPDWEIGEDVYTPGISGDSLRSMSDPAKYGDPDHYSKRYTGTQDNGGVHINSGIINKAAYLISQGGTHYGVSVVGIGRDKLGKIFYRALTQYLTPTSNFSQLRAAAVQSATDLYGSTSQEVASVKQAFDAVGVK 548
                                   242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K7T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K7T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K7T)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu A:282 - Pro A:283   [ RasMol ]  
 

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  5k7t
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  THER_BACTH | P00800
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  3.4.24.27
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        THER_BACTH | P00800: 1fj3 1fjo 1fjq 1fjt 1fju 1fjv 1fjw 1gxw 1hyt 1kei 1kjo 1kjp 1kkk 1kl6 1kr6 1kro 1ks7 1kto 1l3f 1lna 1lnb 1lnc 1lnd 1lne 1lnf 1os0 1pe5 1pe7 1pe8 1qf0 1qf1 1qf2 1thl 1tli 1tlp 1tlx 1tmn 1trl 1y3g 1z9g 1zdp 2a7g 2g4z 2tli 2tlx 2tmn 2whz 2wi0 3dnz 3do0 3do1 3do2 3eim 3f28 3f2p 3fb0 3fbo 3fcq 3fgd 3flf 3for 3fv4 3fvp 3fxp 3fxs 3ls7 3ms3 3msa 3msf 3msn 3n21 3nn7 3p7p 3p7q 3p7r 3p7s 3p7t 3p7u 3p7v 3p7w 3qgo 3qh1 3qh5 3ssb 3t2h 3t2i 3t2j 3t73 3t74 3t87 3t8c 3t8d 3t8f 3t8g 3t8h 3tli 3tmn 3zi6 4d91 4d9w 4h57 4mtw 4mwp 4mxj 4mzn 4n4e 4n5p 4n66 4oi5 4ow3 4tli 4tln 4tmn 4tnl 5a3y 5dpe 5dpf 5fsj 5fsp 5fss 5fxn 5js3 5jss 5jt9 5jvi 5jxn 5l3u 5l41 5l8p 5lif 5lwd 5mnr 5n2t 5n2x 5n2z 5n31 5n34 5n3v 5n3y 5tli 5tln 5tmn 5un3 5uu7 5uu8 5uu9 5uua 5uub 5uuc 5uud 5uue 6tli 6tmn 7tli 7tln 8tli 8tln

(-) Related Entries Specified in the PDB File

5k7n 5k7o 5k7p 5k7q 5k7r 5k7s