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(-) Description

Title :  DERIVATIVE OF MOUSE TGF-BETA2, WITH A DELETION OF RESIDUES 52-71 AND K25R, R26K, L51R, A74K, C77S, L89V, I92V, K94R T95K, I98V SINGLE AMINO ACID SUBSTITUTIONS, BOUND TO HUMAN TGF-BETA TYPE II RECEPTOR ECTODOMAIN RESIDUES 15-130
 
Authors :  A. P. Hinck, S. Kim
Date :  15 Nov 16  (Deposition) - 01 Mar 17  (Release) - 10 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Tgf-Beta, Tgf-Beta Type Ii Receptor, Transferase-Cytokine Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. K. Kim, L. Barron, C. S. Hinck, E. M. Petrunak, K. E. Cano, A. Thangirala, B. Iskra, M. Brothers, M. Vonberg, B. Leal, B. Richter, R. Kodali, A. B. Taylor, S. Du, C. O. Barnes, T. Sulea, G. Calero, P. J. Hart, M. J. Hart, B. Demeler, A. P. Hinck
An Engineered Transforming Growth Factor Beta (Tgf-Beta ) Monomer That Functions As A Dominant Negative To Block Tgf-Beta Signaling.
J. Biol. Chem. V. 292 7173 2017
PubMed-ID: 28228478  |  Reference-DOI: 10.1074/JBC.M116.768754

(-) Compounds

Molecule 1 - TGF-BETA RECEPTOR TYPE-2
    Chains: A
    EC Number: 2.7.11.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 38-153
    Gene: TGFBR2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TGFR-2,TGF-BETA TYPE II RECEPTOR,TRANSFORMING GROWTH FACTOR- BETA RECEPTOR TYPE II,TBETAR-II
 
Molecule 2 - TRANSFORMING GROWTH FACTOR BETA-2
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 303-414
    Gene: TGFB2
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TGF-BETA-2,BSC-1 CELL GROWTH INHIBITOR,CETERMIN, GLIOBLASTOMA-DERIVED T-CELL SUPPRESSOR FACTOR,G-TSF,POLYERGIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5TX4)

(-) Sites  (0, 0)

(no "Site" information available for 5TX4)

(-) SS Bonds  (10, 10)

Asymmetric Unit
No.Residues
1A:28 -A:61
2A:31 -A:48
3A:38 -A:44
4A:54 -A:78
5A:98 -A:113
6A:115 -A:120
7B:7 -B:16
8B:15 -B:58
9B:44 -B:89
10B:48 -B:91

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu B:35 -Pro B:36

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TX4)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5TX4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:107
                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeee.......eee.....eee......eeeeeeee....eeeeeeee..................ee.eeeee..eeeeeeee...hhh.eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 5tx4 A  21 AVKFPQLCKFCDVRFSTCDNQKSCMSNCSITSICEKPQEVCVAVWRKNDENITLETVCHDPKLPYHDFILEDAASPKCIMKEKKKPGETFFMCSCSSDECNDNIIFS 127
                                    30        40        50        60        70        80        90       100       110       120       


Chain B from PDB  Type:PROTEIN  Length:92
                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhh.....eee..eeehhhhhh...eee..eee..eee...........eeee..eeeeeeeeee..eeeeeeeeeeee.eeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 5tx4 B   1 ALDAAYCFRNVQDNCCLRPLYIDFRKDLGWKWIHEPKGYNANFCAGACPYRASKSPSCVSQDLEPLTIVYYVGRKPKVEQLSNMIVKSCKCS  92
                                    10        20        30        40        50        60        70        80        90
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TX4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TX4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TX4)

(-) Gene Ontology  (202, 218)

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  Cis Peptide Bonds
    Glu B:35 - Pro B:36   [ RasMol ]  
 
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  TGFB2_HUMAN | P61812
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  TGFR2_HUMAN | P37173
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  2.7.11.30
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TGFB2_HUMAN | P61812: 1tfg 2tgi 4kxz
        TGFR2_HUMAN | P37173: 1ktz 1m9z 1plo 2pjy 3kfd 4p7u 4xjj 5e8v 5e8y 5e91 5e92 5ty4

(-) Related Entries Specified in the PDB File

5tx2 5tx6