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(-) Description

Title :  JAK3 WITH COVALENT INHIBITOR 7
 
Authors :  F. F. Vajdos
Date :  04 Nov 16  (Deposition) - 22 Feb 17  (Release) - 22 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.72
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Covalent, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Thorarensen, M. E. Dowty, M. E. Banker, B. Juba, J. Jussif, T. Lin, F. Vincent, R. M. Czerwinski, A. Casimiro-Garcia, R. Unwalla, J. I. Trujillo, S. Liang, P. Balbo, Y. Che, A. M. Gilbert, M. F. Brown, M. Hayward, J. Montgomery, L. Leung, X. Yang, S. Soucy, M. Hegen, J. Coe J. Langille, F. Vajdos, J. Chrencik, J. B. Telliez
Design Of A Janus Kinase 3 (Jak3) Specific Inhibitor 1-((2S, 5R)-5-((7H-Pyrrolo[2, 3-D]Pyrimidin-4-Yl)Amino) -2-Methylpiperidin-1-Yl)Prop-2-En-1-One (Pf-06651600) Allowing For The Interrogation Of Jak3 Signaling In Humans.
J. Med. Chem. V. 60 1971 2017
PubMed-ID: 28139931  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B01694

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK3
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF21
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: KINASE DOMAIN (UNP RESIDUES 812-1124)
    Gene: JAK3
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JANUS KINASE 3,JAK-3,LEUKOCYTE JANUS KINASE,L-JAK

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
17KV1Ligand/Ion1-[(3AR,7AR)-1-(7H-PYRROLO[2,3-D]PYRIMIDIN-4-YL)OCTAHYDRO-6H-PYRROLO[2,3-C]PYRIDIN-6-YL]PROPAN-1-ONE
2SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:828 , GLY A:829 , ALA A:853 , GLU A:903 , TYR A:904 , LEU A:905 , GLY A:908 , CYS A:909 , ARG A:911 , ASP A:912 , LEU A:956 , ASP A:967 , HOH A:1349 , HOH A:1353binding site for residue 7KV A 1201
2AC2SOFTWAREARG A:911binding site for residue SO4 A 1202
3AC3SOFTWARELYS A:855 , GLU A:871 , ASP A:967 , PHE A:968 , GLY A:969 , HOH A:1416binding site for residue SO4 A 1203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TTU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5TTU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:271
                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhh.eeeeeeee..eeeeeee........eeeeeee....hhhhhhhhhhhhhhhhh........eeeee..eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee......eee.......hhhhhhhhhhhhheeehhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5ttu A  815 TIFEERHLKYISQLGKGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLW 1099
                                   824     ||837       847       857       867       877       887   ||  903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033    ||1048      1058      1068      1078      1088      1098 
                                         830|                                                      891|                                                                                                                                        1038|                                                       
                                          834                                                       898                                                                                                                                         1044
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TTU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TTU)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (54, 54)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAK3_HUMAN | P52333: 1yvj 3lxk 3lxl 3pjc 3zc6 3zep 4hvd 4hvg 4hvh 4hvi 4i6q 4qps 4qt1 4rio 4v0g 4z16 5lwm 5lwn 5toz 5tts 5ttv 5vo6

(-) Related Entries Specified in the PDB File

5tts 5ttv