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(-) Description

Title :  JAK3 IN COMPLEX WITH A COVALENT EGFR INHIBITOR
 
Authors :  J. E. Debreczeni, E. J. Hennessy, C. Chuaquini, S. Ashton, N. Coclough, D. A. E. Cross, C. Eberlein, L. Gingipalli, T. C. M. Klinowska, J. P. Orm X. Wu
Date :  16 Sep 14  (Deposition) - 13 Jan 16  (Release) - 13 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transferase, Egfr Mutant, T790M (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. J. Hennessy, C. Chuaquini, S. Ashton, N. Coclough, D. A. E. Cross, J. E. Debreczeni, C. Eberlein, L. Gingipalli, T. C. M. Klinowska, J. P. Orme, L. Sha, X. Wu
Utilisation Of Structure Based Design To Identify Novel, Irreversible Inhibitors Of The Epidermal Growth Factor Receptor (Egfr) Harboring The Gatekeeper T790M Mutation
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN KINASE JAK3
    Chains: A
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KINASE DOMAIN, UNP RESIDUES 816-1098
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JANUS KINASE 3, JAK-3, LEUKOCYTE JANUS KINASE, L-JAK, JANUS KINASE 3
 
Molecule 2 - TYROSINE-PROTEIN KINASE JAK3
    Chains: B
    EC Number: 2.7.10.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KINASE DOMAIN, UNP RESIDUES 816-1098
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: JANUS KINASE 3, JAK-3, LEUKOCYTE JANUS KINASE, L-JAK, JANUS KINASE 3

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1G9B2Ligand/IonN-[3-(2-{3-AMINO-6-[1-(1-METHYLPIPERIDIN-4-YL)-1H-PYRAZOL-4-YL]PYRAZIN-2-YL}-1H-BENZIMIDAZOL-1-YL)PHENYL]PROPANAMIDE
2PTR4Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1G9B1Ligand/IonN-[3-(2-{3-AMINO-6-[1-(1-METHYLPIPERIDIN-4-YL)-1H-PYRAZOL-4-YL]PYRAZIN-2-YL}-1H-BENZIMIDAZOL-1-YL)PHENYL]PROPANAMIDE
2PTR2Mod. Amino AcidO-PHOSPHOTYROSINE
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1G9B1Ligand/IonN-[3-(2-{3-AMINO-6-[1-(1-METHYLPIPERIDIN-4-YL)-1H-PYRAZOL-4-YL]PYRAZIN-2-YL}-1H-BENZIMIDAZOL-1-YL)PHENYL]PROPANAMIDE
2PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:828 , ALA A:853 , MET A:902 , GLU A:903 , TYR A:904 , LEU A:905 , PRO A:906 , GLY A:908 , CYS A:909 , ASP A:912 , ARG A:953 , ASP A:967BINDING SITE FOR RESIDUE G9B A2099
2AC2SOFTWAREALA B:853 , MET B:902 , GLU B:903 , TYR B:904 , LEU B:905 , PRO B:906 , GLY B:908 , CYS B:909 , ASP B:912 , ASP B:967BINDING SITE FOR RESIDUE G9B B2099
3AC3not definedARG A:870 , LYS A:972 , LEU A:973 , PRO A:975 , LYS A:978 , ASP A:979 , VAL A:982 , VAL A:983 , ILE A:1003 , PHE A:1004
4AC4SOFTWARELYS B:972 , LEU B:973 , PRO B:975 , LYS B:978 , ASP B:979 , VAL B:982 , ILE B:1003 , PHE B:1004BINDING SITE FOR RESIDUES PTR B 980 AND PTR B 981

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4V0G)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4V0G)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4V0G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4V0G)

(-) Exons   (0, 0)

(no "Exon" information available for 4V0G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:269
                                                                                                                                                                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhh.eeeeeeeee...eeeeeeee........eeeeeeee...hhhhhhhhhhhhhhhhhh.......eeeee....eeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eeeee..eeee......ee......eee...hhhhhhhhhhhhheeehhhhhhhhhhhhhhhhh......hhhhhhhhh..hhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4v0g A  817 FEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDyyVVREPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDML 1098
                                   826       836       846       856       866       876       886     ||900       910       920       930       940       950       960       970       980|   || 994      1004      1014      1024      1034   || 1049      1059      1069      1079      1089         
                                                                                                     892|                                                                                980-PTR5|                                            1038|                                                      
                                                                                                      897                                                                                 981-PTR0                                             1044                                                      


Chain B from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                   
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeeeeee......eeeeee........eeeeee.....hhhhhhhhhhhhhhhhhh.......eeeee....eeeee.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......eee..hhhhhhhhhhhh.eeehhhhhhhhhhhhhhhhh......hhhhhhhhhh......hhhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4v0g B  816 IFEERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGSLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDyyVVRPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGSERDVPALSRLLELLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDML 1098
                                   825       835       845       855       865       875       885      |899       909       919       929       939       949       959       969       979||  || 994      1004      1014      1024      1034      1044      1054      1064      1074      1084      1094    
                                                                                                      892|                                                                                980-PTR|                                                                                                            
                                                                                                       897                                                                                 981-PTR                                                                                                            
                                                                                                                                                                                              984|                                                                                                            
                                                                                                                                                                                               990
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4V0G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4V0G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4V0G)

(-) Gene Ontology  (54, 54)

Asymmetric Unit(hide GO term definitions)

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  4v0g
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  JAK3_HUMAN | P52333
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  2.7.10.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        JAK3_HUMAN | P52333: 1yvj 3lxk 3lxl 3pjc 3zc6 3zep 4hvd 4hvg 4hvh 4hvi 4i6q 4qps 4qt1 4rio 4z16 5lwm 5lwn 5toz 5tts 5ttu 5ttv 5vo6

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4V0G)