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(-) Description

Title :  CRYSTAL STRUCTURE OF THE P300 ACETYLTRANSFERASE CATALYTIC CORE WITH CROTONYL-COENZYME A.
 
Authors :  Z. Kaczmarska, E. Ortega, J. A. Marquez, D. Panne
Date :  25 Jul 16  (Deposition) - 02 Nov 16  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  P300 Acetyltransferase, Crotonyl-Coa, Chromatin Modification, Acylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Kaczmarska, E. Ortega, A. Goudarzi, H. Huang, S. Kim, J. A. Marquez, Y. Zhao, S. Khochbin, D. Panne
Structure Of P300 In Complex With Acyl-Coa Variants.
Nat. Chem. Biol. V. 13 21 2017
PubMed-ID: 27820805  |  Reference-DOI: 10.1038/NCHEMBIO.2217

(-) Compounds

Molecule 1 - HISTONE ACETYLTRANSFERASE P300,HISTONE ACETYLTRANSFERASE P300
    ChainsA
    EC Number2.3.1.48, 2.3.1.48
    EngineeredYES
    Expression SystemTRICHOPLUSIA NI
    Expression System Cell LineHIGH FIVE, HIGH FIVE
    Expression System CommonCABBAGE LOOPER
    Expression System Taxid7111
    FragmentUNP RESIDUES 1043-1519,UNP RESIDUES 1581-1666,UNP RESIDUES 1043-1519,UNP RESIDUES 1581-1666
    GeneEP300, P300
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymP300 HAT,E1A-ASSOCIATED PROTEIN P300,P300 HAT,E1A-ASSOCIATED PROTEIN P300

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1COO1Ligand/IonCROTONYL COENZYME A
2GOL3Ligand/IonGLYCEROL
3ZN4Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:1177 , CYS A:1183 , CYS A:1201 , CYS A:1204binding site for residue ZN A 1701
2AC2SOFTWARECYS A:1247 , CYS A:1250 , CYS A:1272 , CYS A:1275binding site for residue ZN A 1702
3AC3SOFTWARECYS A:1163 , CYS A:1164 , HIS A:1255 , CYS A:1258binding site for residue ZN A 1703
4AC4SOFTWAREHIS A:1315 , CYS A:1408binding site for residue ZN A 1704
5AC5SOFTWARESER A:1396 , TYR A:1397 , LEU A:1398 , ASP A:1399 , SER A:1400 , LYS A:1407 , ARG A:1410 , THR A:1411 , TYR A:1414 , TRP A:1436 , PRO A:1440 , LYS A:1456 , ILE A:1457 , PRO A:1458 , ARG A:1462 , TRP A:1466 , HOH A:1810 , HOH A:1816 , HOH A:1831 , HOH A:1851 , HOH A:1863 , HOH A:1867 , HOH A:1881binding site for residue COO A 1705
6AC6SOFTWAREILE A:1092 , LYS A:1094 , SER A:1095 , ASN A:1127 , LEU A:1130 , GLY A:1347binding site for residue GOL A 1706
7AC7SOFTWARELYS A:1331 , TYR A:1355 , THR A:1357 , SER A:1396binding site for residue GOL A 1707
8AC8SOFTWAREHIS A:1434 , ASP A:1507 , TRP A:1509 , PHE A:1596 , VAL A:1597 , HOH A:1828binding site for residue GOL A 1708

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:1201 -A:1204

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Asp A:1069 -Pro A:1070
2Pro A:1387 -Pro A:1388
3Arg A:1405 -Pro A:1406

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LKZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LKZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5LKZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:550
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh....hhhhh...hhhhhh..hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh..............ee.....ee....eeeee...eeeehhhhh..eeee..eeee.hhheeee........eee......eeehhhhh...........hhhhhhhh................hhhhhhhhhhhhhhhhhhh......eeeeeeeeeeeeee.hhhhhhhhh.......eeeeeeeeeeeeeee..eeeeeeeeeeeee..........eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..eeeee......................hhhhhhhhhhhhhhhhhhh....eeeehhhhhhhh...hhhhh.....hhhhhhhhhhhhhh......hhhhhhhhh...eeeee..hhhhhhh............hhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5lkz A 1046 KKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRKTSRVYKYCSKLSEVFEQEIDPVMQSLGYCCGRKLEFSPQTLCCYGLCTIPRDATYYSYQNRYHFCEKCFNEESVSLGQTTINKEQFSKRKNDTLDPELFVECTECGRKMHQICVLHHEIIWPAGFVCDGCLKKSARTRKENKFSAKRLPSTRLGTFLENRVNDFLRRQNHPESGEVTVRVVHASDKTVEVKPGMKARFVDSGEMAESFPYRTKALFAFEEIDGVDLCFFGMHVQEYGSDCPPPNQRRVYISYLDSVHFFRPKCLRTAVYHEILIGYLEYVKKLGYTTGHIWACPPSEGDDYIFHCHPPDQKIPKPKRLQEWFKKMLDKAVSERIVHDYKDIFKQATEDRLTSAKELPYFEGDFWPNVLEESIKESGGSGSQKLYATMEKHKEVFFVIRLIAGPAANSLPPIVDPDPLIPCDLMDGRDAFLTLARDKHLEFSSLRRAQWSTMCMLVELHTQS 1662
                                  1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175   || 1187      1197      1207|    |1226      1236      1246      1256      1266      1276      1286      1296      1306      1316      1326      1336      1346      1356      1366      1376      1386      1396      1406      1416      1426      1436      1446      1456      1466      1476      1486      1496      1506      1516      1582      1592      1602      1612      1622      1632      1642      1652      1662
                                                                                                                                                              1179|                     1207| 1216|                                                                                                                                                                                                                                                                                                         1524|                                                                                 
                                                                                                                                                               1182                      1211  1223                                                                                                                                                                                                                                                                                                          1581                                                                                 

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LKZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LKZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LKZ)

(-) Gene Ontology  (150, 150)

Asymmetric/Biological Unit(hide GO term definitions)

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  EP300_HUMAN | Q09472
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EP300_HUMAN | Q094721l3e 1p4q 2k8f 2mh0 2mzd 3biy 3i3j 3io2 3p57 3t92 4bhw 4pzr 4pzs 4pzt 5bt3 5lkt 5lku 5lkx

(-) Related Entries Specified in the PDB File

4bhw 4BHW CONTAINS THE SAME PROTEIN COMPLEXED WITH LYSYL-COENZYME A.