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(-) Description

Title :  CRYSTAL STRUCTURE OF THE P300 ACETYLTRANSFERASE CATALYTIC CORE WITH PROPIONYL-COENZYME A.
 
Authors :  Z. Kaczmarska, E. Ortega, J. A. Marquez, D. Panne
Date :  25 Jul 16  (Deposition) - 02 Nov 16  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.52
Chains :  Asym./Biol. Unit :  A
Keywords :  P300 Acetyltransferase, Propionyl-Coa, Chromatin Modification, Acylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Kaczmarska, E. Ortega, A. Goudarzi, H. Huang, S. Kim, J. A. Marquez, Y. Zhao, S. Khochbin, D. Panne
Structure Of P300 In Complex With Acyl-Coa Variants.
Nat. Chem. Biol. V. 13 21 2017
PubMed-ID: 27820805  |  Reference-DOI: 10.1038/NCHEMBIO.2217

(-) Compounds

Molecule 1 - HISTONE ACETYLTRANSFERASE P300,HISTONE ACETYLTRANSFERASE P300
    Chains: A
    EC Number: 2.3.1.48, 2.3.1.48
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Gene: EP300, P300
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: P300 HAT,E1A-ASSOCIATED PROTEIN P300,P300 HAT,E1A-ASSOCIATED PROTEIN P300

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
11VU1Ligand/IonPROPIONYL COENZYME A
2DMS1Ligand/IonDIMETHYL SULFOXIDE
3GOL2Ligand/IonGLYCEROL
4ZN4Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:1177 , CYS A:1183 , CYS A:1201 , CYS A:1204binding site for residue ZN A 1701
2AC2SOFTWARECYS A:1247 , CYS A:1250 , CYS A:1272 , CYS A:1275binding site for residue ZN A 1702
3AC3SOFTWARECYS A:1163 , CYS A:1164 , HIS A:1255 , CYS A:1258binding site for residue ZN A 1703
4AC4SOFTWAREHIS A:1315 , CYS A:1408binding site for residue ZN A 1704
5AC5SOFTWARESER A:1396 , LEU A:1398 , ASP A:1399 , SER A:1400 , LYS A:1407 , ARG A:1410 , THR A:1411 , TYR A:1414 , TRP A:1436 , CYS A:1438 , PRO A:1440 , TYR A:1446 , LYS A:1456 , ILE A:1457 , PRO A:1458 , ARG A:1462 , LEU A:1463 , TRP A:1466 , HOH A:1807 , HOH A:1821 , HOH A:1833 , HOH A:1836 , HOH A:1864 , HOH A:1908binding site for residue 1VU A 1705
6AC6SOFTWAREHIS A:1434 , ILE A:1486 , ASP A:1507 , TRP A:1509 , PHE A:1595 , PHE A:1596 , HOH A:1823 , HOH A:1899binding site for residue DMS A 1706
7AC7SOFTWAREILE A:1092 , VAL A:1093 , LYS A:1094 , SER A:1095 , ASN A:1127 , LEU A:1130 , GLY A:1347binding site for residue GOL A 1707
8AC8SOFTWARELYS A:1331 , TYR A:1355 , THR A:1357 , GLN A:1379 , SER A:1396binding site for residue GOL A 1708

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:1201 -A:1204
2A:1408 -A:1408

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Asp A:1069 -Pro A:1070
2Pro A:1387 -Pro A:1388
3Arg A:1405 -Pro A:1406

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LKX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LKX)

(-) Exons   (0, 0)

(no "Exon" information available for 5LKX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:554
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh....hhhhh...........hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.............................eeeee...eeeehhhhhhh...eeee..eeee.hhheeee........eee......eeehhhhh...........hhhhhhhh................hhhhhhhhhhhhhhhhhhh......eeeeeeeeeeeeee.hhhhhhhhh.......eeeeeeeeeeeeeee..eeeeeeeeeeeee..........eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..eeeee......................hhhhhhhhhhhhhhhhhhh....eeeehhhhhhhh...hhhhh.....hhhhhhhhhhhhhh......hhhhhhhhh...eeeee..hhhhhhh............hhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5lkx A 1046 KKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRKTSRVYKYCSKLSEVFEQEIDPVMQSLGYCCGRKLEFSPQTLCCYGKQLCTIPRDATYYSYQNRYHFCEKCFNEIQGESVSLGQTTINKEQFSKRKNDTLDPELFVECTECGRKMHQICVLHHEIIWPAGFVCDGCLKKSARTRKENKFSAKRLPSTRLGTFLENRVNDFLRRQNHPESGEVTVRVVHASDKTVEVKPGMKARFVDSGEMAESFPYRTKALFAFEEIDGVDLCFFGMHVQEYGSDCPPPNQRRVYISYLDSVHFFRPKCLRTAVYHEILIGYLEYVKKLGYTTGHIWACPPSEGDDYIFHCHPPDQKIPKPKRLQEWFKKMLDKAVSERIVHDYKDIFKQATEDRLTSAKELPYFEGDFWPNVLEESIKESGGSGSQKLYATMEKHKEVFFVIRLIAGPAANSLPPIVDPDPLIPCDLMDGRDAFLTLARDKHLEFSSLRRAQWSTMCMLVELHTQ 1661
                                  1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205      1215||    1231      1241      1251      1261      1271      1281      1291      1301      1311      1321      1331      1341      1351      1361      1371      1381      1391      1401      1411      1421      1431      1441      1451      1461      1471      1481      1491      1501      1511      1521  ||  1587      1597      1607      1617      1627      1637      1647      1657    
                                                                                                                                                                                                   1216|                                                                                                                                                                                                                                                                                                         1524|                                                                                
                                                                                                                                                                                                    1223                                                                                                                                                                                                                                                                                                          1581
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LKX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LKX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LKX)

(-) Gene Ontology  (150, 150)

Asymmetric/Biological Unit(hide GO term definitions)

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  5lkx
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  EP300_HUMAN | Q09472
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  2.3.1.48
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EP300_HUMAN | Q09472: 1l3e 1p4q 2k8f 2mh0 2mzd 3biy 3i3j 3io2 3p57 3t92 4bhw 4pzr 4pzs 4pzt 5bt3 5lkt 5lku 5lkz

(-) Related Entries Specified in the PDB File

4bhw 4BHW CONTAINS THE SAME PROTEIN COMPLEXED WITH LYSYL-COENZYME A.