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(-) Description

Title :  CRYSTAL STRUCTURE OF THE P300 ACETYLTRANSFERASE CATALYTIC CORE WITH BUTYRYL-COENZYME A.
 
Authors :  Z. Kaczmarska, E. Ortega, J. A. Marquez, D. Panne
Date :  24 Jul 16  (Deposition) - 02 Nov 16  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym./Biol. Unit :  A
Keywords :  P300 Acetyltransferase, Butyryl-Coa, Chromatin Modification, Acylation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Kaczmarska, E. Ortega, A. Goudarzi, H. Huang, S. Kim, J. A. Marquez, Y. Zhao, S. Khochbin, D. Panne
Structure Of P300 In Complex With Acyl-Coa Variants.
Nat. Chem. Biol. V. 13 21 2017
PubMed-ID: 27820805  |  Reference-DOI: 10.1038/NCHEMBIO.2217

(-) Compounds

Molecule 1 - HISTONE ACETYLTRANSFERASE P300,HISTONE ACETYLTRANSFERASE P300
    Chains: A
    EC Number: 2.3.1.48, 2.3.1.48
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Fragment: UNP RESIDUES 1043-1519,UNP RESIDUES 1581-1666
    Gene: EP300, P300
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: P300 HAT,E1A-ASSOCIATED PROTEIN P300,P300 HAT,E1A-ASSOCIATED PROTEIN P300

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 10)

Asymmetric/Biological Unit (5, 10)
No.NameCountTypeFull Name
1BCO1Ligand/IonBUTYRYL COENZYME A
2CL1Ligand/IonCHLORIDE ION
3DMS1Ligand/IonDIMETHYL SULFOXIDE
4GOL3Ligand/IonGLYCEROL
5ZN4Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:1177 , CYS A:1183 , CYS A:1201 , CYS A:1204binding site for residue ZN A 1701
2AC2SOFTWARECYS A:1247 , CYS A:1250 , CYS A:1272 , CYS A:1275binding site for residue ZN A 1702
3AC3SOFTWARECYS A:1163 , CYS A:1164 , HIS A:1255 , CYS A:1258binding site for residue ZN A 1703
4AC4SOFTWAREHIS A:1315 , CYS A:1408binding site for residue ZN A 1704
5AC5SOFTWARESER A:1396 , TYR A:1397 , LEU A:1398 , ASP A:1399 , SER A:1400 , LYS A:1407 , ARG A:1410 , THR A:1411 , TYR A:1414 , TRP A:1436 , CYS A:1438 , PRO A:1440 , TYR A:1446 , LYS A:1456 , ILE A:1457 , PRO A:1458 , ARG A:1462 , TRP A:1466 , HOH A:1819 , HOH A:1857 , HOH A:1875 , HOH A:1887 , HOH A:1890 , HOH A:1904 , HOH A:1922 , HOH A:1984 , HOH A:2004binding site for residue BCO A 1705
6AC6SOFTWAREILE A:1092 , VAL A:1093 , LYS A:1094 , SER A:1095 , ASN A:1127 , LEU A:1130 , GLY A:1347binding site for residue GOL A 1706
7AC7SOFTWARELYS A:1331 , TYR A:1355 , THR A:1357 , VAL A:1378 , GLN A:1379 , SER A:1396 , TYR A:1397 , HOH A:1821binding site for residue GOL A 1707
8AC8SOFTWAREGLU A:1320 , THR A:1322 , PHE A:1363 , GLU A:1364 , ASP A:1370 , HOH A:2021binding site for residue GOL A 1708
9AC9SOFTWAREHIS A:1434 , ASP A:1507 , PHE A:1595 , PHE A:1596 , HOH A:1933binding site for residue DMS A 1709

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:1201 -A:1204
2A:1408 -A:1408

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Asp A:1069 -Pro A:1070
2Pro A:1387 -Pro A:1388
3Arg A:1405 -Pro A:1406

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LKT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LKT)

(-) Exons   (0, 0)

(no "Exon" information available for 5LKT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:551
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh....hhhhh...........hhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh..............ee...ee....eeeee...eeeehhhhhhh...eeee..eeee.hhheeee........eee......eeehhhhh...........hhhhhhhh................hhhhhhhhhhhhhhhhhhh......eeeeeeeeeeeeee.hhhhhhhhh.......eeeeeeeeeeeeeee..eeeeeeeeeeeee..........eeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh..eeeee......................hhhhhhhhhhhhhhhhhhh....eeeehhhhhhhh...hhhhh.....hhhhhhhhhhhhhh......hhhhhhhhh...eeeee..hhhhhhh............hhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5lkt A 1046 KKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRKTSRVYKYCSKLSEVFEQEIDPVMQSLGYCCGRKLEFSPQTLCCYCTIPRDATYYSYQNRYHFCEKCFNEIQGESVSLGQTTINKEQFSKRKNDTLDPELFVECTECGRKMHQICVLHHEIIWPAGFVCDGCLKKSARTRKENKFSAKRLPSTRLGTFLENRVNDFLRRQNHPESGEVTVRVVHASDKTVEVKPGMKARFVDSGEMAESFPYRTKALFAFEEIDGVDLCFFGMHVQEYGSDCPPPNQRRVYISYLDSVHFFRPKCLRTAVYHEILIGYLEYVKKLGYTTGHIWACPPSEGDDYIFHCHPPDQKIPKPKRLQEWFKKMLDKAVSERIVHDYKDIFKQATEDRLTSAKELPYFEGDFWPNVLEESIKESGGSGSQKLYATMEKHKEVFFVIRLIAGPAANSLPPIVDPDPLIPCDLMDGRDAFLTLARDKHLEFSSLRRAQWSTMCMLVELHTQS 1662
                                  1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175  ||  1189      1199      1209      1225      1235      1245      1255      1265      1275      1285      1295      1305      1315      1325      1335      1345      1355      1365      1375      1385      1395      1405      1415      1425      1435      1445      1455      1465      1475      1485      1495      1505      1515      1581      1591      1601      1611      1621      1631      1641      1651      1661 
                                                                                                                                                             1178|                             1216|                                                                                                                                                                                                                                                                                                         1524|                                                                                 
                                                                                                                                                              1183                              1223                                                                                                                                                                                                                                                                                                          1581
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LKT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LKT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LKT)

(-) Gene Ontology  (150, 150)

Asymmetric/Biological Unit(hide GO term definitions)

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  5lkt
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  EP300_HUMAN | Q09472
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  2.3.1.48
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EP300_HUMAN | Q09472: 1l3e 1p4q 2k8f 2mh0 2mzd 3biy 3i3j 3io2 3p57 3t92 4bhw 4pzr 4pzs 4pzt 5bt3 5lku 5lkx 5lkz

(-) Related Entries Specified in the PDB File

4bhw 4BHW CONTAINS THE SAME PROTEIN COMPLEXED WITH COA.