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(-) Description

Title :  CRYSTAL STRUCTURE OF NATIVE LACCASE FROM THERMUS THERMOPHILUS HB27
 
Authors :  A. Diaz-Vilchis, R. R. Ruiz-Arellano, E. Rosas-Benitez, E. Rudino-Pi
Date :  06 May 16  (Deposition) - 10 May 17  (Release) - 10 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase, Multicopper Oxidases (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Diaz-Vilchis, R. R. Ruiz-Arellano, E. Rosas-Benitez, V. Stojanoff, E. Rudino-Pinera
Preserving Metallic Sites Affected By Radiation Damage: The Cut2 Case In Thermus Thermophilus Multicopper Oxidase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LACCASE
    Chains: A
    EC Number: 1.10.3.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 24-462
    Gene: TT_C1370
    Organism Scientific: THERMUS THERMOPHILUS (STRAIN HB27 / ATCC BAA- 163 / DSM 7039)
    Organism Taxid: 262724
    Strain: HB27 / ATCC BAA-163 / DSM 7039
    Synonym: MULTICOPPER OXIDASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 19)

Asymmetric/Biological Unit (4, 19)
No.NameCountTypeFull Name
1CU4Ligand/IonCOPPER (II) ION
2MPD13Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
3MRD1Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
4OXY1Ligand/IonOXYGEN MOLECULE

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:95 , HIS A:137 , HIS A:398 , HIS A:444 , CU A:504 , OXY A:519binding site for residue CU A 501
02AC2SOFTWAREHIS A:97 , TRP A:133 , HIS A:135 , HIS A:446 , OXY A:519binding site for residue CU A 502
03AC3SOFTWAREHIS A:393 , CYS A:445 , HIS A:450 , MET A:455binding site for residue CU A 503
04AC4SOFTWAREHIS A:95 , HIS A:97 , HIS A:396 , HIS A:398 , CU A:501 , OXY A:519binding site for residue CU A 504
05AC5SOFTWAREASP A:248 , LEU A:263 , GLU A:267 , ARG A:268 , TYR A:414 , LYS A:418 , MPD A:512binding site for residue MPD A 505
06AC6SOFTWAREGLY A:140 , TRP A:194 , ARG A:453 , MPD A:511 , MPD A:513binding site for residue MPD A 506
07AC7SOFTWAREGLU A:127 , LEU A:128 , SER A:158 , SER A:334 , HOH A:794 , HOH A:823 , HOH A:834binding site for residue MPD A 507
08AC8SOFTWAREGLY A:55 , GLN A:56 , LEU A:339 , ARG A:436 , HOH A:696binding site for residue MPD A 508
09AC9SOFTWAREMET A:295 , MET A:355binding site for residue MPD A 509
10AD1SOFTWAREPRO A:28 , PHE A:67 , ASN A:206 , HOH A:802 , HOH A:816binding site for residue MPD A 510
11AD2SOFTWAREPRO A:144 , PRO A:188 , HIS A:189 , TRP A:194 , MPD A:506 , HOH A:672binding site for residue MPD A 511
12AD3SOFTWARELEU A:256 , VAL A:258 , GLU A:260 , LEU A:261 , MPD A:505 , HOH A:822binding site for residue MPD A 512
13AD4SOFTWAREPRO A:191 , TRP A:194 , ARG A:453 , MPD A:506 , HOH A:826binding site for residue MPD A 513
14AD5SOFTWARELYS A:104 , ARG A:280 , TYR A:317 , LYS A:438 , HOH A:612binding site for residue MPD A 514
15AD6SOFTWAREPRO A:241 , GLU A:257 , ARG A:276 , PRO A:324 , LYS A:325 , PRO A:326binding site for residue MPD A 515
16AD7SOFTWARESER A:26 , VAL A:214 , GLN A:216 , ASN A:362 , GLN A:364binding site for residue MPD A 516
17AD8SOFTWARELYS A:31 , LYS A:43 , LEU A:44 , GLY A:64 , HOH A:648binding site for residue MRD A 517
18AD9SOFTWAREPRO A:342 , VAL A:343 , VAL A:344 , THR A:345binding site for residue MPD A 518
19AE1SOFTWAREHIS A:95 , HIS A:97 , HIS A:135 , HIS A:137 , HIS A:396 , HIS A:398 , HIS A:444 , HIS A:446 , CU A:501 , CU A:502 , CU A:504 , HOH A:638binding site for residue OXY A 519

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JRR)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:67 -Pro A:68

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JRR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JRR)

(-) Exons   (0, 0)

(no "Exon" information available for 5JRR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:439
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee....eeeeeeeeeeeeeee..eeeeeeee.......eeee....eeeeeeee........eee...................eeeeeee......eeeeee.....hhhhhhhh...eeeee.hhhhhhhhhhh.eeeeeeeeee.ee..ee...hhhhhhhh....eeee..ee..eee....eeeeeeee......eeeee....eeeeee..eeeeeeeee..eee....eeeeeee.....eeeeeee......eeee......eeee......eeeeeee........................eeeeeeeeee....eeee...........eee....eeeeeeee.....eeeee....eeeeee..ee.....ee.eeee....eeeeeee....eeeeeee.hhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jrr A  24 GPSFPEPKVVRSQGGLLSLKLSATPTPLAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGLPISPKVDDPFLEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDAIPELREAEEHLLVLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGALRPTLVAQKATLRLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPGERAEVLVRLRKEGRFLLQALPYDRGAMGMMDMGGMAHAMPQGPSRPETLLYLIAPKNPKPLPLPKALSPFPTLPAPVVTRRLVLTEDMMAARFFINGQVFDHRRVDLKGQAQTVEVWEVENQGDMDHPFHLHVHPFQVLSVGGRPFPYRAWKDVVNLKAGEVARLLVPLREKGRTVFHCHIVEHEDRGMMGVLEVG 462
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JRR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JRR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JRR)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Phe A:67 - Pro A:68   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q72HW2_THET2 | Q72HW2: 5jx9 5k0d 5k15 5k3k 5k5k 5k7a 5k84
UniProtKB/TrEMBL
        Q72HW2_THET2 | Q72HW2: 2xu9 2xuw 2xvb 2yae 2yaf 2yah 2yam 2yao 2yap 2yaq 2yar 4ai7 5afa

(-) Related Entries Specified in the PDB File

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