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(-) Description

Title :  CRYSTAL STRUCTURE OF LACCASE FROM THERMUS THERMOPHILUS HB27 COMPLEXED WITH AG, CRYSTAL OF THE HOLOENZYME SOAKED FOR 30 M IN 5 MM AGNO3 AT 278 K.
 
Authors :  N. Jimenez-Arroyo, E. Rudino-Pinera
Date :  19 Jan 15  (Deposition) - 17 Feb 16  (Release) - 17 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.19
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase, Multicopper Oxidase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Jimenez-Arroyo, C. S. Cardona-Felix, S. P. Rojas-Trejo, E. Rudino-Pinera
Structural Function Of The Methionine-Rich Beta-Hairpin In The Laccase For T. Thermophilus.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LACCASE
    Chains: A
    EC Number: 1.10.3.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET32A
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS HB27
    Organism Taxid: 262724
    Other Details: THE PRESENCE OF AN ISOLEUCINE AT THE POSITION 53 IS STRONGLY SUPPORTED BY THE ELECTRON DENSITY

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 22)

Asymmetric/Biological Unit (5, 22)
No.NameCountTypeFull Name
1AG3Ligand/IonSILVER ION
2CU4Ligand/IonCOPPER (II) ION
3MPD6Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4MRD8Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL
5OH1Ligand/IonHYDROXIDE ION

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:248 , LEU A:263 , ARG A:268 , TYR A:414 , LYS A:418 , MRD A:1467BINDING SITE FOR RESIDUE MPD A1463
02AC2SOFTWAREARG A:436 , HOH A:2375 , HOH A:2376BINDING SITE FOR RESIDUE MRD A1464
03AC3SOFTWARELYS A:104 , THR A:212 , ARG A:280 , LYS A:438 , GLY A:439 , HOH A:2374BINDING SITE FOR RESIDUE MRD A1465
04AC4SOFTWARETRP A:194 , ARG A:453 , MPD A:1473BINDING SITE FOR RESIDUE MRD A1466
05AC5SOFTWARELEU A:256 , GLU A:260 , LEU A:261 , MPD A:1463 , HOH A:2253BINDING SITE FOR RESIDUE MRD A1467
06AC6SOFTWAREGLU A:127 , LEU A:128 , SER A:334 , HOH A:2234BINDING SITE FOR RESIDUE MRD A1468
07AC7SOFTWAREGLU A:257 , ARG A:276 , MPD A:1475 , HOH A:2232 , HOH A:2257BINDING SITE FOR RESIDUE MRD A1469
08AC8SOFTWAREPRO A:28 , GLU A:29 , ASN A:206 , MRD A:1474 , HOH A:2008 , HOH A:2064BINDING SITE FOR RESIDUE MPD A1470
09AC9SOFTWAREPRO A:25 , SER A:26 , VAL A:214 , GLN A:216 , ASN A:362 , GLN A:364 , HOH A:2003 , HOH A:2005BINDING SITE FOR RESIDUE MPD A1471
10BC1SOFTWARELYS A:31 , GLY A:64 , HOH A:2061BINDING SITE FOR RESIDUE MPD A1472
11BC2SOFTWAREPRO A:191 , ARG A:453 , MRD A:1466 , HOH A:2188BINDING SITE FOR RESIDUE MPD A1473
12BC3SOFTWAREGLN A:376 , ALA A:377 , GLN A:378 , THR A:379 , MPD A:1470BINDING SITE FOR RESIDUE MRD A1474
13BC4SOFTWAREASP A:239 , ARG A:276 , MRD A:1469BINDING SITE FOR RESIDUE MPD A1475
14BC5SOFTWAREPRO A:144 , PRO A:188 , HIS A:189 , HOH A:2187BINDING SITE FOR RESIDUE MRD A1476
15BC6SOFTWAREMET A:195 , MET A:293 , MET A:354 , MET A:391 , HOH A:2193BINDING SITE FOR RESIDUE AG A1477
16BC7SOFTWAREMET A:296 , MET A:301 , HIS A:303 , MET A:305BINDING SITE FOR RESIDUE AG A1478
17BC8SOFTWAREMET A:192 , MET A:295 , HOH A:2310 , HOH A:2378BINDING SITE FOR RESIDUE AG A1479
18BC9SOFTWAREHIS A:137 , HIS A:398 , HIS A:444 , CU A:1483 , OH A:1484BINDING SITE FOR RESIDUE CU A1480
19CC1SOFTWAREHIS A:97 , TRP A:133 , HIS A:135 , HIS A:446 , OH A:1484BINDING SITE FOR RESIDUE CU A1481
20CC2SOFTWAREHIS A:393 , CYS A:445 , HIS A:450 , MET A:455BINDING SITE FOR RESIDUE CU A1482
21CC3SOFTWAREHIS A:95 , HIS A:97 , HIS A:396 , HIS A:398 , CU A:1480 , OH A:1484 , HOH A:2092BINDING SITE FOR RESIDUE CU A1483
22CC4SOFTWAREHIS A:95 , HIS A:135 , HIS A:137 , HIS A:396 , HIS A:398 , HIS A:444 , HIS A:446 , CU A:1480 , CU A:1481 , CU A:1483 , HOH A:2144BINDING SITE FOR RESIDUE OH A1484

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AFA)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:67 -Pro A:68

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AFA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AFA)

(-) Exons   (0, 0)

(no "Exon" information available for 5AFA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:439
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee....eeeeeeeeeeeeeee..eeeeeeee.......eeee....eeeeeeee........eee...................eeeeeee......eeeeee.....hhhhhhhh...eeeee.hhhhhhhhhhh.eeeeeeeeee.ee..ee...hhhhhhhh....eeee..ee..eee....eeeeeeee......eeeee....eeeeee..eeeeeeeee..eee....eeeeeee....eeeeeeee......eeee......eeee......eeeeeeee.......................eeeeeeeeee....eeee...........eee....eeeeeeee.....eeeee.....eeeee..ee........eeee....eeeeeee....eeeeeee.hhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afa A  24 GPSFPEPKVVRSQGGLLSLKLSATPTPLAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGLPISPKVDDPFLEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDAIPELREAEEHLLVLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGALRPTLVAQKATLRLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPGERAEVLVRLRKEGRFLLQALPYDRGAMGMMDMGGMAHAMPQGPSRPETLLYLIAPKNPKPLPLPKALSPFPTLPAPVVTRRLVLTEDMMAARFFINGQVFDHRRVDLKGQAQTVEVWEVENQGDMDHPFHLHVHPFQVLSVGGRPFPYRAWKDVVNLKAGEVARLLVPLREKGRTVFHCHIVEHEDRGMMGVLEVG 462
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AFA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AFA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AFA)

(-) Gene Ontology  (5, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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    Phe A:67 - Pro A:68   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q4H436_THETH | Q4H436: 4ai7
        Q72HW2_THET2 | Q72HW2: 5jrr 5jx9 5k0d 5k15 5k3k 5k5k 5k7a 5k84
UniProtKB/TrEMBL
        Q72HW2_THET2 | Q72HW2: 2xu9 2xuw 2xvb 2yae 2yaf 2yah 2yam 2yao 2yap 2yaq 2yar 4ai7

(-) Related Entries Specified in the PDB File

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