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(-) Description

Title :  CRYSTAL STRUCTURE OF LACCASE FROM THERMUS THERMOPHILUS HB27 (SODIUM NITRATE 10 MIN)
 
Authors :  A. Diaz-Vilchis, R. R. Ruiz-Arellano, E. Rosas-Benitez, E. Rudino-Pi
Date :  27 May 16  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.78
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase, Multicopper Oxidase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Diaz-Vilchis, R. R. Ruiz-Arellano, E. Rosas-Benitez, V. Stojanoff, E. Rudino-Pinera
Preserving Metallic Sites Affected By Radiation Damage: The Cut2 Case In Thermus Thermophilus Multicopper Oxidase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LACCASE
    Chains: A
    EC Number: 1.10.3.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 24-462
    Gene: TT_C1370
    Organism Scientific: THERMUS THERMOPHILUS (STRAIN HB27 / ATCC BAA- 163 / DSM 7039)
    Organism Taxid: 262724
    Strain: HB27 / ATCC BAA-163 / DSM 7039
    Synonym: MULTICOPPER OXIDASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 17)

Asymmetric/Biological Unit (2, 17)
No.NameCountTypeFull Name
1CU3Ligand/IonCOPPER (II) ION
2MPD14Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:95 , HIS A:137 , HIS A:396 , HIS A:398 , HIS A:444binding site for residue CU A 501
02AC2SOFTWAREHIS A:97 , TRP A:133 , HIS A:135 , HIS A:446binding site for residue CU A 502
03AC3SOFTWAREHIS A:393 , CYS A:445 , HIS A:450 , MET A:455binding site for residue CU A 503
04AC4SOFTWAREASP A:248 , LEU A:263 , GLU A:267 , ARG A:268 , TYR A:414 , LYS A:418 , MPD A:511binding site for residue MPD A 504
05AC5SOFTWAREGLY A:140 , TRP A:194 , ARG A:453 , MPD A:510binding site for residue MPD A 505
06AC6SOFTWAREGLU A:127 , LEU A:128 , SER A:334 , HOH A:807 , HOH A:834binding site for residue MPD A 506
07AC7SOFTWAREGLN A:56 , LEU A:339 , ARG A:436 , HOH A:607binding site for residue MPD A 507
08AC8SOFTWAREMET A:295 , MET A:355 , MPD A:512binding site for residue MPD A 508
09AC9SOFTWAREPRO A:28 , PHE A:67 , ASN A:206 , ALA A:208 , HOH A:734 , HOH A:820 , HOH A:866 , HOH A:948binding site for residue MPD A 509
10AD1SOFTWAREPRO A:144 , PRO A:188 , HIS A:189 , TRP A:194 , MPD A:505 , HOH A:691 , HOH A:846binding site for residue MPD A 510
11AD2SOFTWAREVAL A:258 , GLU A:260 , MPD A:504 , HOH A:827 , HOH A:855binding site for residue MPD A 511
12AD3SOFTWAREMPD A:508 , HOH A:845binding site for residue MPD A 512
13AD4SOFTWARELYS A:104 , THR A:212 , ARG A:280 , TYR A:317 , HOH A:671 , HOH A:712 , HOH A:824binding site for residue MPD A 513
14AD5SOFTWAREPRO A:241 , GLU A:257 , SER A:259 , ARG A:276 , PRO A:326binding site for residue MPD A 514
15AD6SOFTWARESER A:26 , VAL A:214 , GLN A:216 , ASN A:362 , GLN A:364binding site for residue MPD A 515
16AD7SOFTWARELYS A:31 , LYS A:43 , LEU A:44 , GLY A:64binding site for residue MPD A 516
17AD8SOFTWAREPRO A:342 , VAL A:343 , VAL A:344 , THR A:345binding site for residue MPD A 517

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K84)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:67 -Pro A:68

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K84)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K84)

(-) Exons   (0, 0)

(no "Exon" information available for 5K84)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:439
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee....eeeeeeeeeeeeeee..eeeeeeee.......eeee....eeeeeeee........eee...................eeeeeee......eeeeee.....hhhhhhhhh..eeeee.hhhhhhhhhhh.eeeeeeeeee.ee..ee...hhhhhhhh....eeee..ee..eee....eeeeeeee......eeeee....eeeeee..eeeeeeeee..eee....eeeeeee.....eeeeeee......eeeee....eeeee......eeeeeee........................eeeeeeeeee....eeee...........eee....eeeeeeee.....eeeee....eeeeee..ee.....ee.eeee....eeeeeee....eeeeeee.hhhhhhh..eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k84 A  24 GPSFPEPKVVRSQGGLLSLKLSATPTPLAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGLPISPKVDDPFLEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDAIPELREAEEHLLVLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGALRPTLVAQKATLRLRLLNASNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPGERAEVLVRLRKEGRFLLQALPYDRGAMGMMDMGGMAHAMPQGPSRPETLLYLIAPKNPKPLPLPKALSPFPTLPAPVVTRRLVLTEDMMAARFFINGQVFDHRRVDLKGQAQTVEVWEVENQGDMDHPFHLHVHPFQVLSVGGRPFPYRAWKDVVNLKAGEVARLLVPLREKGRTVFHCHIVEHEDRGMMGVLEVG 462
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K84)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K84)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K84)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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    Phe A:67 - Pro A:68   [ RasMol ]  
 

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  5k84
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q72HW2_THET2 | Q72HW2: 5jrr 5jx9 5k0d 5k15 5k3k 5k5k 5k7a
UniProtKB/TrEMBL
        Q72HW2_THET2 | Q72HW2: 2xu9 2xuw 2xvb 2yae 2yaf 2yah 2yam 2yao 2yap 2yaq 2yar 4ai7 5afa

(-) Related Entries Specified in the PDB File

5jrr 5jx9 5k0d 5k15 5k3k 5k5k 5k7a