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(-) Description

Title :  THE X-RAY STRUCTURE OF THE DDB1-DCAF1-VPR-UNG2 COMPLEX
 
Authors :  G. Calero, J. Ahn, Y. Wu
Date :  26 Apr 16  (Deposition) - 05 Oct 16  (Release) - 19 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.49
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,C,G,H  (1x)
Biol. Unit 2:  B,D,E,F  (1x)
Keywords :  Cullin4-Ring E3 Ubiquitin Ligase Hiv-1 Vpr Ung2, Dna Binding Protein- Hydrolase Complex, Viral Protein-Dna Binding Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Wu, X. Zhou, C. O. Barnes, M. Delucia, A. E. Cohen, A. M. Gronenborn, J. Ahn, G. Calero
The Ddb1-Dcaf1-Vpr-Ung2 Crystal Structure Reveals How Hiv-1 Vpr Steers Human Ung2 Toward Destruction.
Nat. Struct. Mol. Biol. V. 23 933 2016
PubMed-ID: 27571178  |  Reference-DOI: 10.1038/NSMB.3284

(-) Compounds

Molecule 1 - DNA DAMAGE-BINDING PROTEIN 1
    Chains: A, B
    Engineered: YES
    Expression System: INSECT CELL EXPRESSION VECTOR PTIE1
    Expression System Taxid: 266783
    Gene: DDB1, XAP1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DDB P127 SUBUNIT,DNA DAMAGE-BINDING PROTEIN A,DDBA,DAMAGE- SPECIFIC DNA-BINDING PROTEIN 1,HBV X-ASSOCIATED PROTEIN 1,XAP-1,UV- DAMAGED DNA-BINDING FACTOR,UV-DAMAGED DNA-BINDING PROTEIN 1,UV-DDB 1, XPE-BINDING FACTOR,XPE-BF,XERODERMA PIGMENTOSUM GROUP E-COMPLEMENTING PROTEIN,XPCE
 
Molecule 2 - PROTEIN VPRBP
    Chains: C, E
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: INSECT CELL EXPRESSION VECTOR PTIE1
    Expression System Taxid: 266783
    Fragment: UNP RESIDUES 1045-1396
    Gene: VPRBP, DCAF1, KIAA0800, RIP
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DDB1- AND CUL4-ASSOCIATED FACTOR 1,HIV-1 VPR-BINDING PROTEIN,VPRBP,SERINE/THREONINE-PROTEIN KINASE VPRBP,VPR-INTERACTING PROTEIN
 
Molecule 3 - URACIL-DNA GLYCOSYLASE
    Chains: D, G
    EC Number: 3.2.2.27
    Engineered: YES
    Expression System: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR PPPARG4
    Expression System Taxid: 1182032
    Fragment: UNP RESIDUES 85-304
    Gene: UNG, DGU, UNG1, UNG15
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: UDG
 
Molecule 4 - PROTEIN VPR
    Chains: F, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR PPPARG4
    Expression System Taxid: 1182032
    Gene: VPR
    Organism Common: HIV-1
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SUBTYPE B (ISOLATE NY5)
    Organism Taxid: 11698
    Strain: ISOLATE NY5
    Synonym: R ORF PROTEIN,VIRAL PROTEIN R

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A C   GH
Biological Unit 2 (1x):  B DEF  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5JK7)

(-) Sites  (0, 0)

(no "Site" information available for 5JK7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JK7)

(-) Cis Peptide Bonds  (42, 42)

Asymmetric Unit
No.Residues
1Lys A:204 -Gly A:205
2Glu A:224 -Pro A:225
3Gln A:234 -Glu A:235
4Asp A:292 -Gly A:293
5Gly A:357 -Pro A:358
6Glu A:482 -Pro A:483
7Gly A:547 -Asp A:548
8Leu A:571 -Pro A:572
9Ser A:772 -Ser A:773
10Ser A:774 -Thr A:775
11Thr A:775 -Ala A:776
12Pro A:777 -His A:778
13Thr A:780 -Ser A:781
14Ser A:781 -Phe A:782
15Lys B:204 -Gly B:205
16Glu B:224 -Pro B:225
17Gln B:234 -Glu B:235
18Asp B:292 -Gly B:293
19Gly B:357 -Pro B:358
20Glu B:482 -Pro B:483
21Gly B:547 -Asp B:548
22Leu B:571 -Pro B:572
23Ser B:772 -Ser B:773
24Ser B:774 -Thr B:775
25Thr B:775 -Ala B:776
26Pro B:777 -His B:778
27Thr B:780 -Ser B:781
28Ser B:781 -Phe B:782
29Ser C:1059 -Phe C:1060
30Pro C:1061 -Lys C:1062
31Gly C:1068 -Gly C:1069
32Gln C:1158 -Pro C:1159
33Tyr D:119 -Pro D:120
34Arg D:162 -Pro D:163
35Ser E:1059 -Phe E:1060
36Pro E:1061 -Lys E:1062
37Gly E:1068 -Gly E:1069
38Gln E:1158 -Pro E:1159
39Met F:1 -Glu F:2
40Tyr G:119 -Pro G:120
41Arg G:162 -Pro G:163
42Arg H:12 -Glu H:13

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JK7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JK7)

(-) Exons   (0, 0)

(no "Exon" information available for 5JK7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1133
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee......eeeee........eeeeee..eeeeeee....eeeeeeee....eeeeeee........eeeeee...eeeeeeeeee..eeeeeeeeeee.............eeee.....eeeee....eeeeee..........eeee.....eeeeee.......eeeeeeee..eeeeeeeeee....eeee.....ee......eeee.......eeee....eeeee..eeeee...hhhhh.eeeeee......eeeeee...eeeeeeeeee.......eeeeeeeeeeee.....eeee....eeeee.....eeeeee..........eeeeeee.....eeeeeee........eeeeee.hhhh.eeeeeee...eeeeeeeeee.eeeeeee..........eeeeee..eeeeeeee..eeeee..........eeeeeee...eeeeee...eeeee....eeeeee.........eeee...eeeeee..eeeeeeee..eeeeeeeee....eeeee............eeeeee....eeeeee.......eeee......eeeeeeeee..eeeeeeee...eeeeeee......eeeeeeee......eeeeee....eeeeee....eeeeee..eeeeee.......eeeee.......eeeee..eeeeeeee.....eeeeeee...eeeeeeee....eeeeeeeeeeee.....eee..........eeee...................eeeeeeeeeee.....eeeeee....eeeeeeeeee......eeeeeeeee..........eeeeeeeee..eeeeeeeeee...eeeeeee..eeeeee..eeeeeee.....eeeeeee.....eeeeeee..eeeeee....eeeeeee....eeeeeee......eeeeee....eeeeee...eeeeeee.....hhhhhh.eeeeeeee....eeeeee.............eeeee....eeeeee.hhhhhhhhhhhhhhhhhhh......hhhhhh.ee....ee....eeehhhhhhhhhhhhhhhhh.....eee...eee.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jk7 A    1 MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGMKREATADDLIKVVEELTRIH 1140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115||    1127      1137   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 1017|                                                                                         1116|                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  1023                                                                                          1119                     


Chain B from PDB  Type:PROTEIN  Length:1133
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee......eeeee........eeeeee..eeeeeee....eeeeeeee....eeeeeee........eeeeee...eeeeeeeeee..eeeeeeeeeee.............eeee.....eeeee....eeeeee..........eeee.....eeeeee.......eeeeeeee..eeeeeeeeee....eeee.....ee......eeee.......eeee....eeeee..eeeee..hhhhhh.eeeeee......eeeeee...eeeeeeeeee.......eeeeeeeeeeee.....eeee....eeeee.....eeeeee..........eeeeeee.....eeeeeee........eeeeee.hhhh.eeeeeee...eeeeeeeeee.eeeeeee..........eeeeee..eeeeeeee..eeeee..........eeeeeee...eeeeee...eeeee....eeeeee.........eeee...eeeeee..eeeeeeee..eeeeee.......eeeee............eeeeee....eeeeee.......eeee......eeeeeeeee..eeeeeeee...eeeeeee......eeeeeeee......eeeeee....eeeeee....eeeeee..eeeeee.......eeeee.......eeeee..eeeeeeee.....eeeeeee...eeeeeeee....eeeeeeeeeeee.....eee..........eeee...................eeeeeeeeeee.....eeeeee....eeeeeeeeee......eeeeeeeee..........eeeeeeeee..eeeeeeeeee...eeeeeee..eeeeee..eeeeeee.....eeeeeee.....eeeeeee..eeeeee....eeeeeee....eeeeeee......eeeeee....eeeeee...eeeeeee.....hhhhhh.eeeeeeee....eeeeee.............eeeee....eeeeee.hhhhhhhhhhhhhhhhhhh......hhhhhh.ee....ee....eeehhhhhhhhhhhhhhhhhhh...eee...eee.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jk7 B    1 MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGMKREATADDLIKVVEELTRIH 1140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1025      1035      1045      1055      1065      1075      1085      1095      1105      1115||    1127      1137   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 1017|                                                                                         1116|                     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  1023                                                                                          1119                     


Chain C from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..........hhhhhhhhh...eeeeee.........eeeeee.....eeeeee...eeeeee.....eeeeee.......eeee.....eeeee.......eeeee......eeeee....eeee......eeeeee..eeeeee.....eee................ee.....eeee..eeee....eeeee..........ee.....eee....eee.....eee.hhhhh....ee.....eeeeeee...eeeeeeeee.....eeeeee...eeeeeee......eeeeee..........eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jk7 C 1046 APINFTSRLNRRASFPKYGGVDGGCFDRHLIFSRFRPISVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLYNVFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDRVIGTKGDIAHIYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQSPFGSSFRTFNATDYKPIATIDVKRNIFDLCTDTKDCYLAVIENQGSMDALNMDTVCRLYEV 1389
                                  1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205      1215      1225      1235      1245      1255      1265      1275      1285      1295      1305      1328      1338      1348      1358      1368      1378      1388 
                                                                                                                                                                                                                                                                                                     1314|                                                             
                                                                                                                                                                                                                                                                                                      1328                                                             


Chain D from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh....hhhhhhhhhhhhhhhh...ee.hhhhhhh...........eeeee.......................hhhhhhhhhhhhh............hhhhhhh.eeeee....ee..........hhhhhhhhhhhhhhhh....eeeeehhhhhhhh........eeeee...............hhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jk7 D   84 FFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL  304
                                    93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303 


Chain E from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..........hhhhhhhhh....eeeee.........eeeeee.....eeeeee...eeeeee.....eeeeee........eee.....eeeee.......eeeee......eeee.....eeee......eeeeee..eeeeee.....eee................ee.....eeee..eeee....eeeee..........ee.....eeee..eeee.....eeee.hhhh.eeeee.....eeeeee........eeeee.....eeeee.....eeeeee......eeeeee..hhhhh...eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jk7 E 1046 APINFTSRLNRRASFPKYGGVDGGCFDRHLIFSRFRPISVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLYNVFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDRVIGTKGDIAHIYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQSPFGSSFRTFNATDYKPIATIDVKRNIFDLCTDTKDCYLAVIENQGSMDALNMDTVCRLYEV 1389
                                  1055      1065      1075      1085      1095      1105      1115      1125      1135      1145      1155      1165      1175      1185      1195      1205      1215      1225      1235      1245      1255      1265      1275      1285      1295      1305      1328      1338      1348      1358      1368      1378      1388 
                                                                                                                                                                                                                                                                                                     1314|                                                             
                                                                                                                                                                                                                                                                                                      1328                                                             


Chain F from PDB  Type:PROTEIN  Length:74
                                                                                                           
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhhhhhhh..........hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                5jk7 F    1 MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHNLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRI   74
                                    10        20        30        40        50        60        70    


Chain G from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh....hhhhhhhhhhhhhhhh...ee.hhhhhhh...........eeeee.......................hhhhhhhhhhhhh............hhhhhhh.eeeee....ee..........hhhhhhhhhhhhhhhh....eeeeehhhhhhhh........eeeee...hhhhh.......hhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5jk7 G   84 FFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL  304
                                    93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303 


Chain H from PDB  Type:PROTEIN  Length:74
                                                                                                           
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                5jk7 H    1 MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHNLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRI   74
                                    10        20        30        40        50        60        70
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JK7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JK7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JK7)

(-) Gene Ontology  (79, 96)

Asymmetric Unit(hide GO term definitions)

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Asymmetric Unit
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  Cis Peptide Bonds
    Arg D:162 - Pro D:163   [ RasMol ]  
    Arg G:162 - Pro G:163   [ RasMol ]  
    Arg H:12 - Glu H:13   [ RasMol ]  
    Asp A:292 - Gly A:293   [ RasMol ]  
    Asp B:292 - Gly B:293   [ RasMol ]  
    Gln A:234 - Glu A:235   [ RasMol ]  
    Gln B:234 - Glu B:235   [ RasMol ]  
    Gln C:1158 - Pro C:1159   [ RasMol ]  
    Gln E:1158 - Pro E:1159   [ RasMol ]  
    Glu A:224 - Pro A:225   [ RasMol ]  
    Glu A:482 - Pro A:483   [ RasMol ]  
    Glu B:224 - Pro B:225   [ RasMol ]  
    Glu B:482 - Pro B:483   [ RasMol ]  
    Gly A:357 - Pro A:358   [ RasMol ]  
    Gly A:547 - Asp A:548   [ RasMol ]  
    Gly B:357 - Pro B:358   [ RasMol ]  
    Gly B:547 - Asp B:548   [ RasMol ]  
    Gly C:1068 - Gly C:1069   [ RasMol ]  
    Gly E:1068 - Gly E:1069   [ RasMol ]  
    Leu A:571 - Pro A:572   [ RasMol ]  
    Leu B:571 - Pro B:572   [ RasMol ]  
    Lys A:204 - Gly A:205   [ RasMol ]  
    Lys B:204 - Gly B:205   [ RasMol ]  
    Met F:1 - Glu F:2   [ RasMol ]  
    Pro A:777 - His A:778   [ RasMol ]  
    Pro B:777 - His B:778   [ RasMol ]  
    Pro C:1061 - Lys C:1062   [ RasMol ]  
    Pro E:1061 - Lys E:1062   [ RasMol ]  
    Ser A:772 - Ser A:773   [ RasMol ]  
    Ser A:774 - Thr A:775   [ RasMol ]  
    Ser A:781 - Phe A:782   [ RasMol ]  
    Ser B:772 - Ser B:773   [ RasMol ]  
    Ser B:774 - Thr B:775   [ RasMol ]  
    Ser B:781 - Phe B:782   [ RasMol ]  
    Ser C:1059 - Phe C:1060   [ RasMol ]  
    Ser E:1059 - Phe E:1060   [ RasMol ]  
    Thr A:775 - Ala A:776   [ RasMol ]  
    Thr A:780 - Ser A:781   [ RasMol ]  
    Thr B:775 - Ala B:776   [ RasMol ]  
    Thr B:780 - Ser B:781   [ RasMol ]  
    Tyr D:119 - Pro D:120   [ RasMol ]  
    Tyr G:119 - Pro G:120   [ RasMol ]  
 
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  5jk7
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  DCAF1_HUMAN | Q9Y4B6
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    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  DDB1_HUMAN | Q16531
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  UNG_HUMAN | P13051
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  VPR_HV1N5 | P12520
    Comparative Protein Structure Models: ModBase
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    Protein-protein Interaction: DIP
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  2.7.11.1
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    Pathway: KEGG | MetaCyc
  3.2.2.27
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Access by UniProt ID/Accession number
  DCAF1_HUMAN | Q9Y4B6
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  DDB1_HUMAN | Q16531
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  UNG_HUMAN | P13051
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  VPR_HV1N5 | P12520
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DCAF1_HUMAN | Q9Y4B6: 3wa0 4cc9 4p7i 4pxw 4z8l 5aja
        DDB1_HUMAN | Q16531: 2b5l 2b5m 2b5n 2hye 3e0c 3ei1 3ei2 3ei3 3ei4 3i7h 3i7k 3i7l 3i7n 3i7o 3i7p 3i89 3i8c 3i8e 4a08 4a09 4a0a 4a0b 4a0k 4a0l 4a11 4ci1 4ci2 4ci3 4e54 4e5z 4tz4 5fqd 5hxb 5v3o
        UNG_HUMAN | P13051: 1akz 1dpu 1emh 1emj 1q3f 1ssp 1ugh 1yuo 2hxm 2oxm 2oyt 2ssp 3fcf 3fci 3fck 3fcl 3tkb 4skn 5ayr
        VPR_HV1N5 | P12520: 1bde 1dsj 1dsk 1kzs 1kzt 1kzv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5JK7)