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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN DCAF1 WD40 REPEATS (Q1250L)
 
Authors :  C. Xu, W. Tempel, H. He, Y. Li, J. R. Walker, C. Bountra, C. H. Arrowsmith, A. M. Edwards, J. Min, Structural Genomics Consortium (Sgc)
Date :  25 Mar 14  (Deposition) - 16 Apr 14  (Release) - 10 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.72
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Structural Genomics Consortium, Sgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Xu, W. Tempel, H. He, A. Seitova, Y. Li, J. R. Walker, C. Bountra, C. H. Arrowsmith, A. M. Edwards, J. Min, Structural Genomics Consortium (Sgc)
Crystal Structure Of Human Dcaf1 Wd40 Repeats (Q1250L)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN VPRBP
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Plasmid: PFBOH-MHL
    Expression System Taxid: 7108
    Gene: VPRBP, DCAF1, KIAA0800, RIP
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DDB1- AND CUL4-ASSOCIATED FACTOR 1, HIV-1 VPR-BINDING PROTEIN, VPRBP, SERINE/THREONINE-PROTEIN KINASE VPRBP, VPR- INTERACTING PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 45)

Asymmetric Unit (1, 45)
No.NameCountTypeFull Name
1UNX45Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (1, 22)
No.NameCountTypeFull Name
1UNX22Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 2 (1, 23)
No.NameCountTypeFull Name
1UNX23Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (0, 0)

(no "Site" information available for 4PXW)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PXW)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gln A:1158 -Pro A:1159
2Gln B:1158 -Pro B:1159

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PXW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PXW)

(-) Exons   (0, 0)

(no "Exon" information available for 4PXW)

(-) Sequences/Alignments

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   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:292
                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee........eeeeee.....eeeeee...eeeeee.....eeeeee.......eeee.....eeeee.......eeeee.....eeeeee....eeee......eeeeee..eeeeee.....eeeee..............ee.....eeee..eeee....eeeee..........ee.....eeee..eeee.....eeee.hhhh.eeeee.....eeeeeee....eeeeeeeee.....eeeeee...eeeeeee.....eeeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4pxw A 1080 FRPISVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLYNVFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDRVIGTKGDIAHIYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSALAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQKSPFGSSFRTFNATDYKPIATIDVKRNIFDLCTDTKDCYLAVIENQGMDTVCRLYEV 1389
                                  1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      1289      1299      1309    ||1331      1341      1351      1361      1371 ||   1387  
                                                                                                                                                                                                                                                                   1314|                                          1373|         
                                                                                                                                                                                                                                                                    1327                                           1380         


Chain B from PDB  Type:PROTEIN  Length:293
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee........eeeeee.....eeeeee...eeeeee.....eeeeee.......eeee.....eeeee.......eeeee.....eeeeee....eeee......eeeeee..eeeeee.....eeeee..............ee.....eeee..eeee....eeeee..........ee.....eeee..eeee.....eeee.hhhh.eeeee.....eeeeee........eeeeee.....eeeeee....eeeeee.....eeeeeee.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4pxw B 1080 FRPISVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLYNVFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDRVIGTKGDIAHIYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSALAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQKSPFGSSFRTFNATDYKPIATIDVKRNIFDLCTDTKDCYLAVIENQGNMDTVCRLYEV 1389
                                  1089      1099      1109      1119      1129      1139      1149      1159      1169      1179      1189      1199      1209      1219      1229      1239      1249      1259      1269      1279      1289      1299      1309    ||1331      1341      1351      1361      1371 ||   1386   
                                                                                                                                                                                                                                                                   1314|                                          1373|          
                                                                                                                                                                                                                                                                    1327                                           1379
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PXW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PXW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PXW)

(-) Gene Ontology  (21, 21)

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  Cis Peptide Bonds
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  DCAF1_HUMAN | Q9Y4B6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DCAF1_HUMAN | Q9Y4B6: 3wa0 4cc9 4p7i 4z8l 5aja 5jk7

(-) Related Entries Specified in the PDB File

4cc9 SOURCE OF MOLECULAR REPLACEMENT MODEL.