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(-) Description

Authors :  G. Slupphaug, C. D. Mol, B. Kavli, A. S. Arvai, H. E. Krokan, J. A. Tainer
Date :  20 Feb 99  (Deposition) - 26 Feb 99  (Release) - 24 Feb 09  (Revision)
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B,E
Keywords :  Dna Glycosylase, Dna Base Excision Repair, Uracil, Dna, Hydrolase/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  G. Slupphaug, C. D. Mol, B. Kavli, A. S. Arvai, H. E. Krokan, J. A. Tainer
A Nucleotide-Flipping Mechanism From The Structure Of Human Uracil-Dna Glycosylase Bound To Dna.
Nature V. 384 87 1996
PubMed-ID: 8900285  |  Reference-DOI: 10.1038/384087A0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*TP*GP*GP*GP*(D1P)P*GP*GP*CP*TP*T)-3')
Molecule 2 - DNA (5'-D(*AP*AP*AP*GP*CP*CP*GP*CP*CP*C)-3')
    EC Number3.2.2.3
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymUDG, UNG

 Structural Features

(-) Chains, Units

Asymmetric/Biological Unit ABE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
1AC1SOFTWAREORP A:5 , GLY E:143 , GLN E:144 , ASN E:145 , TYR E:147 , CYS E:157 , PHE E:158 , ASN E:204 , HIS E:268BINDING SITE FOR RESIDUE URA E 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4SKN)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
1Tyr E:119 -Pro E:120
2Arg E:162 -Pro E:163

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4SKN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4SKN)

(-) Exons   (0, 0)

(no "Exon" information available for 4SKN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:DNA  Length:10
                 4skn A   1 TGGGxGGCTT  10
                                |   10

Chain B from PDB  Type:DNA  Length:10
                 4skn B  21 AAAGCCGCCC  30

Chain E from PDB  Type:PROTEIN  Length:223
               SCOP domains d4skne_ E: Uracil-DNA glycosylase                                                                                                                                                                                               SCOP domains
               CATH domains 4sknE00 E:82-304 Uracil-DNA Glycosylase, subunit E                                                                                                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh..hhhhhhhhhhhhhhhh......hhh..hhhh...hhh..eeeee........................hhhhhhhhhhhhh............hhhhhh.eeeee.................hhhhhhhhhhhhhh.....eeeee.hhhhhhhhh......eeeee....hhhhhh......hhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                                    91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301   

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4SKN)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)


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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

        UNG_HUMAN | P130511akz 1dpu 1emh 1emj 1q3f 1ssp 1ugh 1yuo 2hxm 2oxm 2oyt 2ssp 3fcf 3fci 3fck 3fcl 3tkb 5ayr 5jk7

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4SKN)