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(-) Description

Title :  STRUCTURE OF THE SRII/HTRII(G83F) COMPLEX IN P212121 SPACE GROUP ("V" SHAPE)
 
Authors :  A. Ishchenko, E. Round, V. Borshchevskiy, S. Grudinin, I. Gushchin, J. A. Remeeva, V. Polovinkin, P. Utrobin, T. Balandin, M. Engelhard, G. B V. Gordeliy
Date :  24 Apr 16  (Deposition) - 15 Feb 17  (Release) - 15 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Sensory Rhodopsin Ii, Transducer, Membrane Protein Complex, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Ishchenko, E. Round, V. Borshchevskiy, S. Grudinin, I. Gushchin, J. P. Klare, A. Remeeva, V. Polovinkin, P. Utrobin, T. Balandin, M. Engelhard, G. Buldt, V. Gordeliy
New Insights On Signal Propagation By Sensory Rhodopsin Ii/Transducer Complex.
Sci Rep V. 7 41811 2017
PubMed-ID: 28165484  |  Reference-DOI: 10.1038/SREP41811

(-) Compounds

Molecule 1 - SENSORY RHODOPSIN-2
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SOP2, SOPII
    Organism Common: NATRONOBACTERIUM PHARAONIS
    Organism Scientific: NATRONOMONAS PHARAONIS
    Organism Taxid: 2257
    Synonym: SENSORY RHODOPSIN II,SR-II
 
Molecule 2 - SENSORY RHODOPSIN II TRANSDUCER
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HTR2, HTRII
    Mutation: YES
    Organism Common: NATRONOBACTERIUM PHARAONIS
    Organism Scientific: NATRONOMONAS PHARAONIS
    Organism Taxid: 2257
    Synonym: HTR-II,METHYL-ACCEPTING PHOTOTAXIS PROTEIN II,MPP-II

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 19)

Asymmetric/Biological Unit (3, 19)
No.NameCountTypeFull Name
1BOG2Ligand/IonB-OCTYLGLUCOSIDE
2LFA15Ligand/IonEICOSANE
3RET2Ligand/IonRETINAL

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:45binding site for residue LFA A 302
02AC2SOFTWAREALA A:23 , GLY A:26binding site for residue LFA A 303
03AC3SOFTWARETHR C:103binding site for residue LFA A 304
04AC4SOFTWAREVAL A:142binding site for residue LFA A 306
05AC5SOFTWAREVAL A:138 , ALA A:172binding site for residue LFA A 308
06AC6SOFTWAREGLY A:32 , TYR A:36 , TYR A:37 , ARG A:152 , ILE A:156 , ALA A:212 , LEU A:219binding site for residue BOG A 309
07AC7SOFTWARETRP A:76 , THR A:80 , VAL A:108 , MET A:109 , GLY A:112 , PHE A:127 , PHE A:134 , TRP A:171 , TYR A:174 , PRO A:175 , ASP A:201 , THR A:204 , LYS A:205binding site for residue RET A 310
08AC8SOFTWAREMET A:129 , GLY A:136binding site for residue LFA A 311
09AC9SOFTWAREILE C:121binding site for residue LFA C 301
10AD1SOFTWARETRP A:60 , ILE A:74binding site for residue LFA C 302
11AD2SOFTWARELEU C:16binding site for residue LFA C 303
12AD3SOFTWAREVAL C:142binding site for residue LFA C 304
13AD4SOFTWAREGLY C:32 , TYR C:36 , TYR C:37 , ARG C:152 , LEU C:213 , ALA C:216 , HOH C:429binding site for residue BOG C 305
14AD5SOFTWAREMET C:15 , ILE C:43 , ALA C:47 , TRP C:76 , THR C:79 , THR C:80 , VAL C:108 , GLY C:112 , PHE C:127 , PHE C:134 , TRP C:171 , TYR C:174 , PRO C:175 , ASP C:201 , LEU C:202 , VAL C:203 , THR C:204 , VAL C:206 , GLY C:207 , PHE C:208 , GLY C:209 , HOH C:402binding site for Di-peptide RET C 307 and LYS C 205

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JJN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5JJN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JJN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JJN)

(-) Exons   (0, 0)

(no "Exon" information available for 5JJN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:223
                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...eeee..eeeehhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jjn A   3 GLTTLFWLGAIGMLVGTLAFAWAGRDAGSGERRYYVTLVGISGIAAVAYVVMALGVGWVPVAERTVFAPRYIDWILTTPLIVYFLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPGIERYALFGMGAVAFLGLVYYLVGPMTESASQRSSGIKSLYVRLRNLTVILWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFIALDAAATLRAEHGE 225
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222   


Chain B from PDB  Type:PROTEIN  Length:61
                                                                                             
               SCOP domains ------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 5jjn B  23 GAVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLIILLGINLGLVAATLF  83
                                    32        42        52        62        72        82 


Chain C from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh...eeee..eeeehhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jjn C   3 GLTTLFWLGAIGMLVGTLAFAWAGRDAGSGERRYYVTLVGISGIAAVAYVVMALGVGWVPVAERTVFAPRYIDWILTTPLIVYFLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPGIERYALFGMGAVAFLGLVYYLVGPMTESASQRSSGIKSLYVRLRNLTVILWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFIALDAAA 217
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212     


Chain D from PDB  Type:PROTEIN  Length:61
                                                                                             
               SCOP domains ------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 5jjn D  23 GAVFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQEAAVSAILGLIILLGINLGLVAATLF  83
                                    32        42        52        62        72        82
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JJN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JJN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JJN)

(-) Gene Ontology  (14, 20)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BACS2_NATPH | P42196: 1gu8 1gue 1h2s 1h68 1jgj 2f93 2f95 3qap 3qdc 4gyc 5jje 5jjf 5jjj
        HTR2_NATPH | P42259: 1h2s 2f93 2f95 2rm8 4gyc 5jje 5jjf 5jjj

(-) Related Entries Specified in the PDB File

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