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(-) Description

Title :  APO-STRUCTURE OF HUMANISED RADA-MUTANT HUMRADA26F
 
Authors :  G. Fischer, M. Marsh, T. Moschetti, T. Sharpe, D. Scott, M. Morgan, H. Ng J. Skidmore, A. Venkitaraman, C. Abell, T. L. Blundell, M. Hyvonen
Date :  18 Apr 16  (Deposition) - 19 Oct 16  (Release) - 30 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.49
Chains :  Asym./Biol. Unit :  A
Keywords :  Dna Repair, Fragment Based Drug Design, Humanisation, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Moschetti, T. Sharpe, G. Fischer, M. E. Marsh, H. K. Ng, M. Morgan, D. E. Scott, T. L. Blundell, A. R Venkitaraman, J. Skidmore, C. Abell, M. Hyvonen
Engineering Archeal Surrogate Systems For The Development O Protein-Protein Interaction Inhibitors Against Human Rad51.
J. Mol. Biol. V. 428 4589 2016
PubMed-ID: 27725183  |  Reference-DOI: 10.1016/J.JMB.2016.10.009

(-) Compounds

Molecule 1 - DNA REPAIR AND RECOMBINATION PROTEIN RADA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PBAT4
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RADA, PF1926
    Mutation: YES
    Organism Scientific: PYROCOCCUS FURIOSUS (STRAIN ATCC 43587 / DSM 3638 / JCM 8422 / VC1)
    Organism Taxid: 186497
    Strain: ATCC 43587 / DSM 3638 / JCM 8422 / VC1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:143 , LYS A:144 , THR A:145 , GLN A:146 , HOH A:572binding site for residue CA A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JEE)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:294 -Gly A:295

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JEE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JEE)

(-) Exons   (0, 0)

(no "Exon" information available for 5JEE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee...hhhhhhhh...ee..eeeeee.....hhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhh..hhhhhhhheeeee..hhhhhhhhhhhhhhhhhhh......eeeeeee..hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee............eeeeee....eeeeeee.eeeeeee..eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jee A 109 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGKAMYIDTENTFRPERLLEIAQNRGLDPDEVLDNVAYARAFNSNHQMLLVQQASDMMKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHSATLRVYLRKGKGGKRIARLIGEAVFSITEKGIED 349
                                   118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278    || 293 ||    314       324   ||  341        
                                                                                                                                                                                                        283|   295|                  328|             
                                                                                                                                                                                                         289    307                   336
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JEE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JEE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JEE)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  5jee
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  RADA_PYRFU | O74036
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RADA_PYRFU | O74036: 1pzn 4a6p 4a6x 4b2i 4b2l 4b2p 4b32 4b33 4b34 4b35 4b3b 4b3c 4b3d 4d6p 4uqo 5fos 5fot 5fou 5fov 5fow 5fox 5fpk 5j4h 5j4k 5j4l 5jec 5jed 5jfg 5kdd 5l8v 5lb2 5lb4 5lbi

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5JEE)