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(-) Description

Title :  STRUCTURE OF HUMANISED RADA-MUTANT HUMRADA22F IN COMPLEX WITH INDOLE-6-CARBOXYLIC ACID
 
Authors :  G. Fischer, M. Marsh, T. Moschetti, T. Sharpe, D. Scott, M. Morgan, H. Ng J. Skidmore, A. Venkitaraman, C. Abell, T. L. Blundell, M. Hyvonen
Date :  01 Apr 16  (Deposition) - 19 Oct 16  (Release) - 30 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.37
Chains :  Asym./Biol. Unit :  A
Keywords :  Dna Repair, Fragment Based Drug Design, Humanisation, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Moschetti, T. Sharpe, G. Fischer, M. E. Marsh, H. K. Ng, M. Morgan, D. E. Scott, T. L. Blundell, A. R Venkitaraman, J. Skidmore, C. Abell, M. Hyvonen
Engineering Archeal Surrogate Systems For The Development O Protein-Protein Interaction Inhibitors Against Human Rad51.
J. Mol. Biol. V. 428 4589 2016
PubMed-ID: 27725183  |  Reference-DOI: 10.1016/J.JMB.2016.10.009

(-) Compounds

Molecule 1 - DNA REPAIR AND RECOMBINATION PROTEIN RADA
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PBAT4
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RADA, PF1926
    Mutation: YES
    Organism Scientific: PYROCOCCUS FURIOSUS (STRAIN ATCC 43587 / DSM 3638 / JCM 8422 / VC1)
    Organism Taxid: 186497

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
11F11Ligand/Ion1H-INDOLE-6-CARBOXYLIC ACID
2CA1Ligand/IonCALCIUM ION
3DMS1Ligand/IonDIMETHYL SULFOXIDE
4NA2Ligand/IonSODIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:118 , MET A:169 , ILE A:171 , ALA A:201 , ALA A:203 , LEU A:214 , ALA A:218 , HOH A:562 , HOH A:662 , HOH A:671binding site for residue 1F1 A 401
2AC2SOFTWAREASN A:199 , HOH A:580 , HOH A:688 , HOH A:715 , HOH A:765binding site for residue NA A 402
3AC3SOFTWAREGLN A:131 , ASN A:273 , HOH A:549 , HOH A:557 , HOH A:666binding site for residue NA A 403
4AC4SOFTWAREGLY A:143 , LYS A:144 , THR A:145 , GLN A:146 , HOH A:665binding site for residue CA A 404
5AC5SOFTWARESER A:114 , GLU A:160 , GLU A:161 , GLY A:162 , ARG A:251binding site for residue DMS A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5J4H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5J4H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J4H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J4H)

(-) Exons   (0, 0)

(no "Exon" information available for 5J4H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee...hhhhhhhh...ee..eeeeee.....hhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhh..hhhhhhhheeeee..hhhhhhhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..........eeeeeee.hhh.eeeeee.........eeeeee..eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j4h A 108 ATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSAMYIDTENTFRPERLREIAQNRGLDPDEVLDNVAYARAFNSNHQMLLVQQAEDMIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
                                   117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       304       314       324       334       344     
                                                                                                                                                                                                           285|                                              
                                                                                                                                                                                                            303
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J4H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J4H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J4H)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  5j4h
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  RADA_PYRFU | O74036
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RADA_PYRFU | O74036: 1pzn 4a6p 4a6x 4b2i 4b2l 4b2p 4b32 4b33 4b34 4b35 4b3b 4b3c 4b3d 4d6p 4uqo 5fos 5fot 5fou 5fov 5fow 5fox 5fpk 5j4k 5j4l 5jec 5jed 5jee 5jfg 5kdd 5l8v 5lb2 5lb4 5lbi

(-) Related Entries Specified in the PDB File

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