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(-) Description

Title :  RAD51 (RADA)
 
Authors :  D. S. Shin, J. A. Tainer
Date :  12 Jul 03  (Deposition) - 09 Sep 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym. Unit :  A,B,C,D,E,F,G
Biol. Unit 1:  A,B,C,D,E,F,G  (2x)
Biol. Unit 2:  A,B,C,D,E,F,G  (1x)
Keywords :  Heptameric Ring; Heptamer; Ring; Oligomer; Rad51 Polymerization Motif; Helix-Hairpin-Helix; Dna Repair; Dna Recombination; Atpase; Homologous Recombination, Recombination (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. S. Shin, L. Pellegrini, D. S. Daniels, B. Yelent, L. Craig, D. Bates, D. S. Yu, M. K. Shivji, C. Hitomi, A. S. Arvai, N. Volkmann, H. Tsuruta, T. L. Blundell, A. R. Venkitaraman, J. A. Tainer
Full-Length Archaeal Rad51 Structure And Mutants: Mechanism For Rad51 Assembly And Control By Brca2
Embo J. V. 22 4566 2003
PubMed-ID: 12941707  |  Reference-DOI: 10.1093/EMBOJ/CDG429

(-) Compounds

Molecule 1 - DNA REPAIR AND RECOMBINATION PROTEIN RAD51
    ChainsA, B, C, D, E, F, G
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Organism ScientificPYROCOCCUS FURIOSUS
    Organism Taxid2261
    SynonymRAD51;
RADA;
RECOMBINASE RADA

 Structural Features

(-) Chains, Units

  1234567
Asymmetric Unit ABCDEFG
Biological Unit 1 (2x)ABCDEFG
Biological Unit 2 (1x)ABCDEFG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 50)

Asymmetric Unit (5, 50)
No.NameCountTypeFull Name
1GOL9Ligand/IonGLYCEROL
2IMD9Ligand/IonIMIDAZOLE
3MPD4Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4MSE21Mod. Amino AcidSELENOMETHIONINE
5SO47Ligand/IonSULFATE ION
Biological Unit 1 (5, 100)
No.NameCountTypeFull Name
1GOL18Ligand/IonGLYCEROL
2IMD18Ligand/IonIMIDAZOLE
3MPD8Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4MSE42Mod. Amino AcidSELENOMETHIONINE
5SO414Ligand/IonSULFATE ION
Biological Unit 2 (5, 50)
No.NameCountTypeFull Name
1GOL9Ligand/IonGLYCEROL
2IMD9Ligand/IonIMIDAZOLE
3MPD4Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4MSE21Mod. Amino AcidSELENOMETHIONINE
5SO47Ligand/IonSULFATE ION

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:141 , SER A:142 , GLY A:143 , LYS A:144 , THR A:145 , HOH A:406 , HOH A:421BINDING SITE FOR RESIDUE SO4 A 350
02AC2SOFTWAREGLU B:139 , PHE B:140 , GLY B:141 , SER B:142 , GLY B:143 , LYS B:144 , THR B:145BINDING SITE FOR RESIDUE SO4 B 351
03AC3SOFTWAREGLU C:139 , GLY C:141 , SER C:142 , GLY C:143 , LYS C:144 , THR C:145BINDING SITE FOR RESIDUE SO4 C 352
04AC4SOFTWAREGLU D:139 , GLY D:141 , SER D:142 , GLY D:143 , LYS D:144 , THR D:145BINDING SITE FOR RESIDUE SO4 D 353
05AC5SOFTWAREGLU E:139 , PHE E:140 , GLY E:141 , SER E:142 , GLY E:143 , LYS E:144 , THR E:145BINDING SITE FOR RESIDUE SO4 E 354
06AC6SOFTWAREGLU F:139 , PHE F:140 , GLY F:141 , SER F:142 , GLY F:143 , LYS F:144 , THR F:145BINDING SITE FOR RESIDUE SO4 F 355
07AC7SOFTWAREGLU G:139 , GLY G:141 , SER G:142 , GLY G:143 , LYS G:144 , THR G:145 , HOH G:401BINDING SITE FOR RESIDUE SO4 G 356
08AC8SOFTWAREARG A:99 , TYR B:201BINDING SITE FOR RESIDUE IMD A 357
09AC9SOFTWAREGLY A:321 , ARG A:323 , LYS F:319 , GLY F:320BINDING SITE FOR RESIDUE IMD A 358
10BC1SOFTWAREARG A:251 , GLY B:250 , ARG B:251 , GLY B:252 , ALA B:253 , LEU B:254BINDING SITE FOR RESIDUE IMD B 359
11BC2SOFTWARELYS B:319 , GLY B:320 , GLY B:321 , ARG E:323BINDING SITE FOR RESIDUE IMD B 360
12BC3SOFTWARELYS A:319 , GLY A:320 , GLY F:321 , ARG F:323BINDING SITE FOR RESIDUE IMD A 361
13BC4SOFTWAREARG B:99 , TYR C:201 , HOH C:443BINDING SITE FOR RESIDUE IMD C 362
14BC5SOFTWAREARG E:99 , TYR F:201 , LYS F:221 , GLU F:224BINDING SITE FOR RESIDUE IMD F 363
15BC6SOFTWARETYR A:201 , ARG G:99BINDING SITE FOR RESIDUE IMD A 364
16BC7SOFTWAREGLY B:321 , ARG B:323 , LYS E:319BINDING SITE FOR RESIDUE IMD B 365
17BC8SOFTWAREHIS F:199 , ARG F:230BINDING SITE FOR RESIDUE GOL F 366
18BC9SOFTWAREARG A:99 , LYS B:198BINDING SITE FOR RESIDUE GOL B 367
19CC1SOFTWAREARG C:99 , LYS D:198BINDING SITE FOR RESIDUE GOL C 368
20CC2SOFTWARETHR D:96 , ALA E:203BINDING SITE FOR RESIDUE GOL D 369
21CC3SOFTWARELYS C:198BINDING SITE FOR RESIDUE GOL C 370
22CC4SOFTWAREARG D:99 , LYS E:198BINDING SITE FOR RESIDUE GOL E 371
23CC5SOFTWAREARG E:99 , LYS F:198BINDING SITE FOR RESIDUE GOL F 372
24CC6SOFTWAREARG F:99 , LYS G:198BINDING SITE FOR RESIDUE GOL F 373
25CC7SOFTWARELYS A:198BINDING SITE FOR RESIDUE GOL A 374
26CC8SOFTWAREALA A:61 , LYS A:263 , ALA A:266 , ASP A:267 , ASN B:207BINDING SITE FOR RESIDUE MPD B 375
27CC9SOFTWAREARG D:99 , TYR E:201 , LYS E:221 , GLU E:224BINDING SITE FOR RESIDUE MPD E 376
28DC1SOFTWAREARG G:183 , GLN G:187BINDING SITE FOR RESIDUE MPD G 377
29DC2SOFTWAREGLN G:146 , ILE G:342BINDING SITE FOR RESIDUE MPD G 378

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1PZN)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Asp A:238 -Ser A:239
2Asp B:238 -Ser B:239
3Asp C:238 -Ser C:239
4Asp D:238 -Ser D:239
5Asp E:238 -Ser E:239
6Asp F:238 -Ser F:239
7Asp G:238 -Ser G:239

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1PZN)

(-) PROSITE Motifs  (2, 14)

Asymmetric Unit (2, 14)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECA_2PS50162 RecA family profile 1.RADA_PYRFU109-285
 
 
 
 
 
 
  7A:109-285
B:109-285
C:109-285
D:109-285
E:109-285
F:109-285
G:109-285
2RECA_3PS50163 RecA family profile 2.RADA_PYRFU290-349
 
 
 
 
 
 
  7A:302-349
B:302-349
C:302-349
D:302-349
E:302-349
F:302-349
G:303-349
Biological Unit 1 (2, 28)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECA_2PS50162 RecA family profile 1.RADA_PYRFU109-285
 
 
 
 
 
 
  14A:109-285
B:109-285
C:109-285
D:109-285
E:109-285
F:109-285
G:109-285
2RECA_3PS50163 RecA family profile 2.RADA_PYRFU290-349
 
 
 
 
 
 
  14A:302-349
B:302-349
C:302-349
D:302-349
E:302-349
F:302-349
G:303-349
Biological Unit 2 (2, 14)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RECA_2PS50162 RecA family profile 1.RADA_PYRFU109-285
 
 
 
 
 
 
  7A:109-285
B:109-285
C:109-285
D:109-285
E:109-285
F:109-285
G:109-285
2RECA_3PS50163 RecA family profile 2.RADA_PYRFU290-349
 
 
 
 
 
 
  7A:302-349
B:302-349
C:302-349
D:302-349
E:302-349
F:302-349
G:303-349

(-) Exons   (0, 0)

(no "Exon" information available for 1PZN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:300
 aligned with RADA_PYRFU | O74036 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:315
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344     
           RADA_PYRFU    35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
               SCOP domains d1pzna1 A:35-95 DNA repair protein Rad51, N-terminal domain  d1pzna2 A:96-349 DNA repair protein Rad51, catalytic domain                                                                                                                                                                                                    SCOP domains
               CATH domains 1pznA01 A:35-100 5' to 3' exonuclease, C-terminal subdomain       1pznA02 A:101-349 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                    CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhh....hhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhhh.....eehhhhhhhhhh..ee...hhhhhhhhh..ee..eeeeeee....hhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhh...hhhhhh..eeeee..hhhhhhhhhhhhhhhhhhh......eeeeeee....hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..---------------.........eeeeeee....eeeeee.........eeeeeee..eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------RECA_2  PDB: A:109-285 UniProt: 109-285                                                                                                                                          ----RECA_3  PDB: A:302-349 UniProt: 290-349                      PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pzn A  35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFmRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVmVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQmLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ---------------GHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
                                    44        54        64        74        84        94   |   104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284 |       -       304       314       324       334       344     
                                                                                          98-MSE                                                 154-MSE                                                   212-MSE                                                                   286             302                                               

Chain B from PDB  Type:PROTEIN  Length:239
 aligned with RADA_PYRFU | O74036 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:254
                                   105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345    
           RADA_PYRFU    96 TFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
               SCOP domains d1pznb1 B:96-349 DNA repair protein Rad51, catalytic domain                                                                                                                                                                                                    SCOP domains
               CATH domains 1pznB00 B:96-349 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh....ee...hhhhhhhh...ee..eeeeeee....hhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhh...hhhhhh..eeeee..hhhhhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..---------------.........eeeeeeee...eeeeee..........eeeeee..eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------RECA_2  PDB: B:109-285 UniProt: 109-285                                                                                                                                          ----RECA_3  PDB: B:302-349 UniProt: 290-349                      PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pzn B  96 TFmRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVmVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQmLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ---------------GHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
                              |    105       115       125       135       145       155       165       175       185       195       205      |215       225       235       245       255       265       275       285|        -      |305       315       325       335       345    
                             98-MSE                                                 154-MSE                                                   212-MSE                                                                   286             302                                               

Chain C from PDB  Type:PROTEIN  Length:239
 aligned with RADA_PYRFU | O74036 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:254
                                   105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345    
           RADA_PYRFU    96 TFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
               SCOP domains d1pznc1 C:96-349 DNA repair protein Rad51, catalytic domain                                                                                                                                                                                                    SCOP domains
               CATH domains 1pznC00 C:96-349 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhhhhhhhhh..ee...hhhhhhhh...ee..eeeeeee....hhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhh..hhhhhh..eeeee..hhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..---------------.........eeeeeee....eeeeee.........eeeeeee..eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------RECA_2  PDB: C:109-285 UniProt: 109-285                                                                                                                                          ----RECA_3  PDB: C:302-349 UniProt: 290-349                      PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pzn C  96 TFmRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVmVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQmLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ---------------GHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
                              |    105       115       125       135       145       155       165       175       185       195       205      |215       225       235       245       255       265       275       285|        -      |305       315       325       335       345    
                             98-MSE                                                 154-MSE                                                   212-MSE                                                                   286             302                                               

Chain D from PDB  Type:PROTEIN  Length:239
 aligned with RADA_PYRFU | O74036 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:254
                                   105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345    
           RADA_PYRFU    96 TFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
               SCOP domains d1pznd1 D:96-349 DNA repair protein Rad51, catalytic domain                                                                                                                                                                                                    SCOP domains
               CATH domains 1pznD00 D:96-349 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhhhhhhhhh..ee...hhhhhhhh...ee..eeeeeee....hhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhh..hhhhhh..eeeee..hhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..---------------.........eeeeee.......eeee.........eee..ee..ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------RECA_2  PDB: D:109-285 UniProt: 109-285                                                                                                                                          ----RECA_3  PDB: D:302-349 UniProt: 290-349                      PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pzn D  96 TFmRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVmVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQmLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ---------------GHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
                              |    105       115       125       135       145       155       165       175       185       195       205      |215       225       235       245       255       265       275       285|        -      |305       315       325       335       345    
                             98-MSE                                                 154-MSE                                                   212-MSE                                                                   286             302                                               

Chain E from PDB  Type:PROTEIN  Length:239
 aligned with RADA_PYRFU | O74036 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:254
                                   105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345    
           RADA_PYRFU    96 TFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
               SCOP domains d1pzne1 E:96-349 DNA repair protein Rad51, catalytic domain                                                                                                                                                                                                    SCOP domains
               CATH domains 1pznE00 E:96-349 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhhhhhhhhh..ee...hhhhhhhh...ee..eeeeeee....hhhhhhhhhhhhh...........eeeeee.....hhhhhhhhhhh...hhhhhh..eeeee..hhhhhhhhhhhhhhhhhhhh.....eeeeeee....hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..---------------.........eeeeeee.....eeeee.........eeeeeee..eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------RECA_2  PDB: E:109-285 UniProt: 109-285                                                                                                                                          ----RECA_3  PDB: E:302-349 UniProt: 290-349                      PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pzn E  96 TFmRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVmVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQmLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ---------------GHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
                              |    105       115       125       135       145       155       165       175       185       195       205      |215       225       235       245       255       265       275       285|        -      |305       315       325       335       345    
                             98-MSE                                                 154-MSE                                                   212-MSE                                                                   286             302                                               

Chain F from PDB  Type:PROTEIN  Length:239
 aligned with RADA_PYRFU | O74036 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:254
                                   105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345    
           RADA_PYRFU    96 TFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
               SCOP domains d1pznf1 F:96-349 DNA repair protein Rad51, catalytic domain                                                                                                                                                                                                    SCOP domains
               CATH domains 1pznF00 F:96-349 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eehhhhhhhhhh..ee...hhhhhhhhh..ee..eeeeeee....hhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhh...hhhhhh..eeeee..hhhhhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..---------------.........eeeeeee....eeeee..........eeeeeee..ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------RECA_2  PDB: F:109-285 UniProt: 109-285                                                                                                                                          ----RECA_3  PDB: F:302-349 UniProt: 290-349                      PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pzn F  96 TFmRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVmVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQmLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ---------------GHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
                              |    105       115       125       135       145       155       165       175       185       195       205      |215       225       235       245       255       265       275       285|        -      |305       315       325       335       345    
                             98-MSE                                                 154-MSE                                                   212-MSE                                                                   286             302                                               

Chain G from PDB  Type:PROTEIN  Length:238
 aligned with RADA_PYRFU | O74036 from UniProtKB/Swiss-Prot  Length:349

    Alignment length:254
                                   105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345    
           RADA_PYRFU    96 TFMRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
               SCOP domains d1pzng1 G:96-349 DNA repair protein Rad51, catalytic domain                                                                                                                                                                                                    SCOP domains
               CATH domains 1pznG00 G:96-349 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                                          CATH domains
           Pfam domains (1) Rad51-1pznG01 G:96-349                                                                                                                                                                                                                                         Pfam domains (1)
           Pfam domains (2) Rad51-1pznG02 G:96-349                                                                                                                                                                                                                                         Pfam domains (2)
           Pfam domains (3) Rad51-1pznG03 G:96-349                                                                                                                                                                                                                                         Pfam domains (3)
           Pfam domains (4) Rad51-1pznG04 G:96-349                                                                                                                                                                                                                                         Pfam domains (4)
           Pfam domains (5) Rad51-1pznG05 G:96-349                                                                                                                                                                                                                                         Pfam domains (5)
           Pfam domains (6) Rad51-1pznG06 G:96-349                                                                                                                                                                                                                                         Pfam domains (6)
           Pfam domains (7) Rad51-1pznG07 G:96-349                                                                                                                                                                                                                                         Pfam domains (7)
         Sec.struct. author ..eehhhhhhhh....ee...hhhhhhhh...ee..eeeeeee....hhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhh.......hhhh.eeeee..hhhhhhhhhhhhhhhhhh.......eeeeeee....hhhhhh....hhhhhhhhhhhhhhhhhhhhhhh..eeeeeee..----------------........eeeeeeee...eeeeee..........eeeeee..eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------RECA_2  PDB: G:109-285 UniProt: 109-285                                                                                                                                          ----RECA_3  PDB: G:303-349 UniProt: 290-349                      PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1pzn G  96 TFmRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVmVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQmLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ----------------HILAHSATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSITEKGIED 349
                              |    105       115       125       135       145       155       165       175       185       195       205      |215       225       235       245       255       265       275       285|        -       305       315       325       335       345    
                             98-MSE                                                 154-MSE                                                   212-MSE                                                                   286              303                                              

   Legend:   → Mismatch (orange background)
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 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 7)

Asymmetric Unit

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G   (RADA_PYRFU | O74036)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0008094    DNA-dependent ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
    GO:0003684    damaged DNA binding    Interacting selectively and non-covalently with damaged DNA.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006259    DNA metabolic process    Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
    GO:0006310    DNA recombination    Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RADA_PYRFU | O740364a6p 4a6x 4b2i 4b2l 4b2p 4b32 4b33 4b34 4b35 4b3b 4b3c 4b3d 4d6p 4uqo 5fos 5fot 5fou 5fov 5fow 5fox 5fpk 5j4h 5j4k 5j4l 5jec 5jed 5jee 5jfg 5kdd 5l8v 5lb2 5lb4 5lbi

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1PZN)