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(-) Description

Title :  THE X-RAY STRUCTURE OF INHIBITOR BOUND TO JCV HELICASE
 
Authors :  E. Ter Haar
Date :  31 Mar 16  (Deposition) - 20 Jul 16  (Release) - 24 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.99
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Keywords :  Helicase, Hexamer, Zn, Atp, Hydrolase-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Bonafoux, S. Nanthakumar, U. K. Bandarage, C. Memmott, D. Lowe, A. M. Aronov, G. R. Bhisetti, K. C. Bonanno, J. Coll, J. Leeman, C. A. Lepre, F. Lu, E. Perola, R. Rijnbrand, W. P. Taylor, D. Wilson, Y. Zhou, J. Zwahlen, E. Ter Haar
Fragment-Based Discovery Of Dual Jc Virus And Bk Virus Helicase Inhibitors.
J. Med. Chem. V. 59 7138 2016
PubMed-ID: 27385654  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B00486

(-) Compounds

Molecule 1 - LARGE T ANTIGEN
    Chains: A
    EC Number: 3.6.4.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 261-628
    Mutation: YES
    Organism Common: JCPYV
    Organism Scientific: JC POLYOMAVIRUS
    Organism Taxid: 10632
    Synonym: LT-AG

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (6x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
16JJ1Ligand/Ion6-(2-PHENOXYPHENYL)[1,2,4]TRIAZOLO[3,4-B][1,3,4]THIADIAZOLE
2MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3ZN1Ligand/IonZINC ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
16JJ6Ligand/Ion6-(2-PHENOXYPHENYL)[1,2,4]TRIAZOLO[3,4-B][1,3,4]THIADIAZOLE
2MES6Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3ZN-1Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:303 , CYS A:306 , HIS A:314 , HIS A:318binding site for residue ZN A 701
2AC2SOFTWAREILE A:581 , TRP A:582 , LYS A:601 , ASP A:605 , SER A:609 , MET A:610 , HOH A:906binding site for residue MES A 702
3AC3SOFTWARETRP A:394 , LYS A:419 , ASP A:430 , THR A:435 , PRO A:550 , LYS A:551 , LEU A:554 , ARG A:555 , LEU A:558 , LEU A:565 , HOH A:921binding site for residue 6JJ A 703

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5J47)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5J47)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J47)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J47)

(-) Exons   (0, 0)

(no "Exon" information available for 5J47)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhh.eee....hhhhhhhhhhhhh....eeeeee....hhhhh....hhhhhhh.hhhhhhh...eee....eee....eeeee.....hhhhhh...eeee...hhhhhhhhhh.hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5j47 A 266 TKQVSWKLVTQYALDTKCEDVFLLMGMYLNFQEAPAACAACAAADQPNHFNHHEKHYYNAQIFADSKNQKSICQQAVDTVAAKQRVDSLHMTREEMLVERFNFLLDKMDLIFGAHGNAVLEQYMAGVAWIHCLLPQMDTVIYEFLKCIVLNIPKKRYWLFKGPIDSGKTTLAAALLDLCGGKSLNVNMPLERLNFELGVGIDQFMVVFEDVKGTGAESRDLPSGHGISNLDCLRDYLDGSVKVNLERNKRTQVFPPGIVTMNEYSVPRTLQARFVRQIDFRPKAYLRKSLSCSEYLLEKRILQSGMTLLLLLIWFRPVADFAAAIHERIVQWKERLDLEISMYTFSTMKANVGMGAPILD 628
                                   275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505      |518       528       538       548       558       568       578       588       598       608       618       628
                                                                                                                                                                                                                                                                                512|                                                                                                                
                                                                                                                                                                                                                                                                                 516
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J47)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J47)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J47)

(-) Gene Ontology  (16, 16)

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  5j47
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  3.6.4.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LT_POVJC | P03072: 4lif 4lmd 4nbp 5cyn 5j40 5j4v 5j4y

(-) Related Entries Specified in the PDB File

5j40 5j4v 5j4y