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(-) Description

Title :  THE CRYSTAL STRUCTURE OF N-(4-(2-(THIAZOLO[5,4-C]PYRIDIN-2-YL) PHENOXY)PHENYL)ACETAMIDE BOUND TO JCV HELICASE
 
Authors :  E. Ter Haar
Date :  01 Apr 16  (Deposition) - 20 Jul 16  (Release) - 24 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.59
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (6x)
Keywords :  Helicase, Hexamer, Zn, Atp, Hydrolase-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Bonafoux, S. Nanthakumar, U. K. Bandarage, C. Memmott, D. Lowe, A. M. Aronov, G. R. Bhisetti, K. C. Bonanno, J. Coll, J. Leeman, C. A. Lepre, F. Lu, E. Perola, R. Rijnbrand, W. P. Taylor, D. Wilson, Y. Zhou, J. Zwahlen, E. Ter Haar
Fragment-Based Discovery Of Dual Jc Virus And Bk Virus Helicase Inhibitors.
J. Med. Chem. V. 59 7138 2016
PubMed-ID: 27385654  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B00486

(-) Compounds

Molecule 1 - LARGE T ANTIGEN
    Chains: A
    EC Number: 3.6.4.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 261-628
    Mutation: YES
    Organism Common: JCPYV
    Organism Scientific: JC POLYOMAVIRUS
    Organism Taxid: 10632
    Synonym: LT-AG

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (6x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
16JG1Ligand/IonN-{4-[2-([1,3]THIAZOLO[5,4-C]PYRIDIN-2-YL)PHENOXY]PHENYL}ACETAMIDE
2MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SO42Ligand/IonSULFATE ION
4ZN1Ligand/IonZINC ION
Biological Unit 1 (3, 24)
No.NameCountTypeFull Name
16JG6Ligand/IonN-{4-[2-([1,3]THIAZOLO[5,4-C]PYRIDIN-2-YL)PHENOXY]PHENYL}ACETAMIDE
2MES6Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SO412Ligand/IonSULFATE ION
4ZN-1Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:303 , CYS A:306 , HIS A:314 , HIS A:318binding site for residue ZN A 701
2AC2SOFTWAREILE A:581 , TRP A:582 , LYS A:601 , ASP A:605 , SER A:609 , MET A:610binding site for residue MES A 702
3AC3SOFTWARELYS A:282 , CYS A:283 , GLU A:284 , ASP A:285 , LEU A:288 , HOH A:802binding site for residue SO4 A 703
4AC4SOFTWAREASP A:430 , SER A:431 , GLY A:432 , LYS A:433 , THR A:434 , THR A:435 , ARG A:499 , 6JG A:705 , HOH A:807binding site for residue SO4 A 704
5AC5SOFTWARETRP A:394 , LYS A:419 , LYS A:420 , ASP A:430 , SER A:431 , GLY A:432 , THR A:435 , PRO A:550 , LYS A:551 , LEU A:554 , ARG A:555 , LEU A:558 , LEU A:565 , SO4 A:704binding site for residue 6JG A 705

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5J4Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5J4Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5J4Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5J4Y)

(-) Exons   (0, 0)

(no "Exon" information available for 5J4Y)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:363
                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhh.eee.......hhhhhhhhhh....eeeeee....hhhhh....hhhhhhhhhhhhhhh...eee.......eee....eeeee.....hhhhhh...eeee...hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5j4y A 266 TKQVSWKLVTQYALDTKCEDVFLLMGMYLNFQEAPAACAACAAADQPNHFNHHEKHYYNAQIFADSKNQKSICQQAVDTVAAKQRVDSLHMTREEMLVERFNFLLDKMDLIFGAHGNAVLEQYMAGVAWIHCLLPQMDTVIYEFLKCIVLNIPKKRYWLFKGPIDSGKTTLAAALLDLCGGKSLNVNMPLERLNFELGVGIDQFMVVFEDVKGTGAESRDLPSGHGISNLDCLRDYLDGSVKVNLERKHQNKRTQVFPPGIVTMNEYSVPRTLQARFVRQIDFRPKAYLRKSLSCSEYLLEKRILQSGMTLLLLLIWFRPVADFAAAIHERIVQWKERLDLEISMYTFSTMKANVGMGAPILD 628
                                   275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5J4Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5J4Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5J4Y)

(-) Gene Ontology  (16, 16)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LT_POVJC | P03072: 4lif 4lmd 4nbp 5cyn 5j40 5j47 5j4v

(-) Related Entries Specified in the PDB File

5j40 5j47 5j4v