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(-) Description

Title :  HUMAN RECOMBINANT COAGULATION FXI IN COMPLEX WITH A PEPTIDE DERIVED FROM HUMAN HIGH MOLECULAR WEIGHT KININOGEN (HKP)
 
Authors :  G. A. F. Hall, S. S. Wong, J. Emsley
Date :  08 Feb 16  (Deposition) - 06 Apr 16  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Coagulation Fxi, High Molecular Weight Kininogen, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. S. Wong, S. Stergaard, G. Hall, C. Li, P. M. Williams, H. Stennicke, J. Emsley
A Novel Dfp Tripeptide Motif Interacts With The Coagulation Factor Xi Apple 2 Domain.
Blood V. 127 2915 2016
PubMed-ID: 27006387  |  Reference-DOI: 10.1182/BLOOD-2015-10-676122

(-) Compounds

Molecule 1 - COAGULATION FACTOR XI
    ChainsA
    EC Number3.4.21.27
    EngineeredYES
    Expression SystemCRICETULUS GRISEUS
    Expression System CommonCHINESE HAMSTER
    Expression System Taxid10029
    GeneF11
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymFXI,PLASMA THROMBOPLASTIN ANTECEDENT,PTA
 
Molecule 2 - ASN-PRO-ILE-SER-ASP-PHE-PRO-ASP
    ChainsB
    EngineeredYES
    Expression SystemSYNTHETIC CONSTRUCT
    Expression System Taxid32630
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:72binding site for residue NAG A 901
2AC2SOFTWAREASN A:108 , SER A:110binding site for residue NAG A 902
3AC3SOFTWAREASN A:432 , SER A:434binding site for residue NAG A 903

(-) SS Bonds  (17, 17)

Asymmetric/Biological Unit
No.Residues
1A:2 -A:85
2A:28 -A:58
3A:32 -A:38
4A:92 -A:175
5A:118 -A:147
6A:122 -A:128
7A:182 -A:265
8A:208 -A:237
9A:212 -A:218
10A:273 -A:356
11A:299 -A:328
12A:303 -A:309
13A:321 -A:321
14A:362 -A:482
15A:398 -A:414
16A:496 -A:563
17A:527 -A:542

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ser A:391 -Pro A:392
2Arg A:507 -Asp A:508
3Glu A:579 -Gly A:580

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I25)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I25)

(-) Exons   (0, 0)

(no "Exon" information available for 5I25)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:596
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee...eeeeee..hhhhhhhhhhhh....eeeee......hhhhh.eeeee........eee...eeeee...............eeeeeee..eeeeeee..hhhhhhhhhhhh....eeeee.....hhhhh.eeeeee........eeeeeeeeeee.hhhhh.............eee..eeeeeee..hhhhhhhhhhhh....eeeee.....hhhhh.eeeeee........eee...eeeee.hhhhhhhh........eeeeeee.eeeeeeee.hhhhhhhhhhhh....eeeee.hhhhh....eeeeeee.......eeeeeeeeeeee.hhhhhhhhhhhh...................eeeeee.....eeeeeeee....eeee.hhhhh...hhh.eeeee..............eeeeeeee.............eeeee................hhhhh......eeeee..............eeee..eehhhhhhhhh........eeee.........eeeeee..eeeeeeee..........eeeee...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i25 A   1 ECVTQLLKDTCFEGGDITTVFTPSAKYCQVVCTYHPRCLLFTFTAESPSEDPTRWFTCVLKDSVTETLPRVNRTAAISGYSFKQCSHQISACNKDIYVDLDMKGINYNSSVAKSAQECQERCTDDVHCHFFTYATRQFPSLEHRNICLLKHTQTGTPTRITKLDKVVSGFSLKSCALSNLACIRDIFPNTVFADSNIDSVMAPDAFVCGRICTHHPGCLFFTFFSQEWPKESQRNLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYCKGDSGGPLSCKHNEVWHLVGITSWGEGCAERPGVYTNVVEYVDWILEKTQ 605
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540    || 557       567       577    || 589       599      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          545|                          582|                    
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           553                           585                    

Chain B from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 5i25 B   2 NPISDFPD   9

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I25)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I25)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I25)

(-) Gene Ontology  (39, 48)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:507 - Asp A:508   [ RasMol ]  
    Glu A:579 - Gly A:580   [ RasMol ]  
    Ser A:391 - Pro A:392   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FA11_HUMAN | P039511xx9 1xxd 1xxf 1zhm 1zhp 1zhr 1zjd 1zlr 1zmj 1zml 1zmn 1zom 1zpb 1zpc 1zpz 1zrk 1zsj 1zsk 1zsl 1ztj 1ztk 1ztl 2f83 2fda 2j8j 2j8l 3bg8 3sor 3sos 4cr5 4cr9 4cra 4crb 4crc 4crd 4cre 4crf 4crg 4d76 4d7f 4d7g 4na7 4na8 4ty6 4ty7 4wxi 4x6m 4x6n 4x6o 4x6p 4y8x 4y8y 4y8z 5e2o 5e2p 5eod 5eok 5exl 5exm 5exn 5q0d 5q0e 5q0f 5q0g 5q0h 5tks 5tkt 5tku
        KNG1_HUMAN | P010421ny2 2wok 4asq 4asr 4ecb 4ecc

(-) Related Entries Specified in the PDB File

5eod 5EOD CONTAINS THE SAME PROTEIN COMPLEXED WITH PEPTIDE LP2 DERIVED FROM HUMAN LAMININ ALPHA 1
5eok 5EOK CONTAINS THE SAME PROTEIN COMPLEXED WITH PEPTIDE LP2 DERIVED FROM HUMAN HIGH MOLECULAR WEIGHT KININOGEN