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(-) Description

Title :  HUMAN PLASMA COAGULATION FXI WITH PEPTIDE LP2
 
Authors :  S. S. Wong, S. Ostergaard, G. Hall, C. Li, P. M. Williams, H. Stennicke, J
Date :  10 Nov 15  (Deposition) - 06 Apr 16  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Human, Plasma, Coagulation Factor Xi, Complex, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. S. Wong, S. Stergaard, G. Hall, C. Li, P. M. Williams, H. Stennicke, J. Emsley
A Novel Dfp Tripeptide Motif Interacts With The Coagulation Factor Xi Apple 2 Domain.
Blood V. 127 2915 2016
PubMed-ID: 27006387  |  Reference-DOI: 10.1182/BLOOD-2015-10-676122

(-) Compounds

Molecule 1 - COAGULATION FACTOR XI
    Chains: A
    EC Number: 3.4.21.27
    Engineered: YES
    Expression System: CRICETULUS GRISEUS
    Expression System Common: CHINESE HAMSTER
    Expression System Taxid: 10029
    Gene: F11
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FXI,PLASMA THROMBOPLASTIN ANTECEDENT,PTA
 
Molecule 2 - LP2
    Chains: B
    Engineered: YES
    Expression System: SYNTHETIC CONSTRUCT
    Expression System Taxid: 32630
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:72binding site for Mono-Saccharide NAG A 901 bound to ASN A 72
2AC2SOFTWAREASN A:108 , ASP A:125binding site for Mono-Saccharide NAG A 902 bound to ASN A 108
3AC3SOFTWAREASN A:432 , ASN A:512binding site for Mono-Saccharide NAG A 903 bound to ASN A 432

(-) SS Bonds  (16, 16)

Asymmetric/Biological Unit
No.Residues
1A:2 -A:85
2A:28 -A:58
3A:32 -A:38
4A:92 -A:175
5A:118 -A:147
6A:122 -A:128
7A:182 -A:265
8A:208 -A:237
9A:212 -A:218
10A:273 -A:356
11A:299 -A:328
12A:303 -A:309
13A:362 -A:482
14A:398 -A:414
15A:496 -A:563
16A:527 -A:542

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:78 -Gly A:79
2Ser A:391 -Pro A:392

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EOD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EOD)

(-) Exons   (0, 0)

(no "Exon" information available for 5EOD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:586
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee...eeeeee..hhhhhhhhhhhh....eeeee......hhhhh.eeeee........eee...eeeee.hhhh..........eeeeeeee.eeeeeee..hhhhhhhhhhhh....eeeee...........eeeeee.......eeeeeeeeeeee.hhhhh.............eee..eeeeeee..hhhhhhhhhhhh....eeeee.....hhhhh.eeeeee........eee...eeeee.hhhhh...........eeeeeee.eeeeeeee.hhhhhhhhhhh.....eeeee.......eeeeeee.......eeeeeeeeeeee...hhhhhhhhhh...................eeeeee.....eeeeeeee....eeee.hhhhh...hhh.eeee....hhhhh........eeeeee.............eeeee................hhhhhhh....eeeee..........eeeee.eehhhhhhhhh........eeee........eeeeee..eeeeeeeee........eeeee...hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eod A   2 CVTQLLKDTCFEGGDITTVFTPSAKYCQVVCTYHPRCLLFTFTAESPSEDPTRWFTCVLKDSVTETLPRVNRTAAISGYSFKQCSHQISACNKDIYVDLDMKGINYNSSVAKSAQECQERCTDDVHCHFFTYATRQFPSLEHRNICLLKHTQTGTPTRITKLDKVVSGFSLKSCALSNLACIRDIFPNTVFADSNIDSVMAPDAFVCGRICTHHPGCLFFTFFSQEWPKESQRNLCLLKTSESGLPSTRIKKSKALSGFSLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNECTTKIKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYKGDSGGPLSCKHNEVWHLVGITSWGEGCERPGVYTNVVEYVDWILEKTQ 605
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311      |324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       508       518       528       538      |556       566       576    || 589       599      
                                                                                                                                                                                                                                                                                                                                                      318|                                                                                                                                                                                  503|                                  545|                        581|                    
                                                                                                                                                                                                                                                                                                                                                       322                                                                                                                                                                                   508                                   554                         585                    


Chain B from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 5eod B   0 EFPDFP   5
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EOD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EOD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EOD)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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    Ser A:78 - Gly A:79   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FA11_HUMAN | P03951: 1xx9 1xxd 1xxf 1zhm 1zhp 1zhr 1zjd 1zlr 1zmj 1zml 1zmn 1zom 1zpb 1zpc 1zpz 1zrk 1zsj 1zsk 1zsl 1ztj 1ztk 1ztl 2f83 2fda 2j8j 2j8l 3bg8 3sor 3sos 4cr5 4cr9 4cra 4crb 4crc 4crd 4cre 4crf 4crg 4d76 4d7f 4d7g 4na7 4na8 4ty6 4ty7 4wxi 4x6m 4x6n 4x6o 4x6p 4y8x 4y8y 4y8z 5e2o 5e2p 5eok 5exl 5exm 5exn 5i25 5q0d 5q0e 5q0f 5q0g 5q0h 5tks 5tkt 5tku

(-) Related Entries Specified in the PDB File

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