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(-) Description

Title :  FACTOR XIA IN COMPLEX WITH THE INHIBITOR METHYL [(4R,5E,8S)-8-({(2E)-3-[5-CHLORO-2-(1H-TETRAZOL-1-YL)PHENYL]PROP-2-ENOYL}AMINO)-4-METHYL-2-OXO-1,3,4,7,8,10-HEXAHYDRO-2H-12,9-(AZENO)-1,10-BENZODIAZACYCLOTETRADECIN-15-YL]CARBAMATE
 
Authors :  S. Sheriff
Date :  01 May 17  (Deposition) - 12 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.12
Chains :  Asym./Biol. Unit :  A,H
Keywords :  Hydrolase, Serine Protease, Blood Coagulation Factor, Protein Inhibitor Complex, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Corte, W. Yang, T. Fang, Y. Wang, H. Osuna, A. Lai, W. R. Ewing, K. A. Rossi, J. E. Myers Jr. , S. Sheriff, Z. Lou, J. J. Zheng, T. W. Harper, J. M. Bozarth, Y. Wu, J. M. Luettgen, D. A. Seiffert, M. L. Quan, P. Y. S. Lam, R. R. Wexler
Macrocyclic Inhibitors Of Factor Xia: Discovery Of Alkyl-Substituted Macrocyclic Amide Linkers With Improved Potency
Bioorg. Med. Chem. Lett. 2017
PubMed: search  |  Reference-DOI: 10.1016/J.BMCL.2017.06.058
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - COAGULATION FACTOR XI
    Chains: A
    EC Number: 3.4.21.27
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET14B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: HEAVY CHAIN (UNP RESIDUES 388-625)
    Gene: F11
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FXI,PLASMA THROMBOPLASTIN ANTECEDENT,PTA
 
Molecule 2 - MET-ASP-ASP-ASP-ASP-LYS-MET-ASP-ASN-GLU-CYS-THR-THR-LYS- ILE-LYS-PRO-ARG
    Chains: H
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric/Biological Unit (3, 15)
No.NameCountTypeFull Name
19FA1Ligand/IonMETHYL [(4R,5E,8S)-8-({(2E)-3-[5-CHLORO-2-(1H-TETRAZOL-1-YL)PHENYL]PROP-2-ENOYL}AMINO)-4-METHYL-2-OXO-1,3,4,7,8,10-HEXAHYDRO-2H-12,9-(AZENO)-1,10-BENZODIAZACYCLOTETRADECIN-15-YL]CARBAMATE
2EDO12Ligand/Ion1,2-ETHANEDIOL
3SO42Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:39 , HIS A:40 , LEU A:41 , HIS A:57 , LEU A:147 , ILE A:151 , ASP A:189 , ALA A:190 , CYS A:191 , LYS A:192 , GLY A:193 , ASP A:194 , SER A:195 , TRP A:215 , GLY A:216 , GLY A:218 , CYS A:219 , GLY A:226 , VAL A:227 , EDO A:304 , EDO A:307 , EDO A:315 , HOH A:425 , HOH A:446 , HOH A:454binding site for residue 9FA A 301
02AC2SOFTWAREVAL A:23 , ARG A:24 , GLY A:25 , GLU A:26 , TRP A:27 , PRO A:28 , ILE A:70 , LEU A:71 , LEU A:155 , HOH A:410 , HOH A:412binding site for residue SO4 A 302
03AC3SOFTWARELYS A:169 , ARG A:170 , ARG A:184Bbinding site for residue SO4 A 303
04AC4SOFTWARE9FA A:301 , EDO A:307 , EDO A:308 , EDO A:315 , HOH A:511binding site for residue EDO A 304
05AC5SOFTWAREASN A:49 , VAL A:112 , GLY A:113 , TYR A:114 , HOH A:450binding site for residue EDO A 305
06AC6SOFTWAREARG A:24 , SER A:99 , GLY A:173 , HIS A:174 , LYS A:175 , HOH A:460 , HOH A:485 , HOH A:492 , HOH A:536binding site for residue EDO A 306
07AC7SOFTWARESER A:81 , GLY A:216 , GLU A:217 , GLY A:218 , 9FA A:301 , EDO A:304 , EDO A:308 , HOH A:491binding site for residue EDO A 307
08AC8SOFTWAREGLY A:216 , GLU A:217 , EDO A:304 , EDO A:307 , HOH A:422binding site for residue EDO A 308
09AC9SOFTWAREHIS A:178binding site for residue EDO A 309
10AD1SOFTWAREGLN A:38 , HOH A:408 , HOH A:530binding site for residue EDO A 310
11AD2SOFTWAREGLU A:167 , ARG A:170 , GLY A:184 , ARG A:184B , GLU A:223 , ARG A:224 , PRO A:225 , HOH A:431binding site for residue EDO A 311
12AD3SOFTWAREHIS A:178 , MET A:180 , ILE A:181 , ASN A:230 , HOH A:539 , HOH A:546binding site for residue EDO A 312
13AD4SOFTWARESER A:99 , GLY A:100 , TYR A:101 , THR A:177 , LYS A:179binding site for residue EDO A 313
14AD5SOFTWAREGLU A:26 , TRP A:137 , LYS A:157 , HOH A:413binding site for residue EDO A 314
15AD6SOFTWAREGLY A:113 , TYR A:114 , 9FA A:301 , EDO A:304 , HOH A:445 , HOH A:511binding site for residue EDO A 315

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1A:42 -A:58
2A:122 -H:362
3A:136 -A:201
4A:168 -A:182
5A:191 -A:219

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:36A-Pro A:36B

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5Q0F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5Q0F)

(-) Exons   (0, 0)

(no "Exon" information available for 5Q0F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:238
                                                                                                                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee........eeeeee.....eeeeeeeeee..eeeehhhhhh...hhh.eeee....hhhhh......eeeeeeee.....hhhhh...eeeee................hhhhhh.....eeeee..............eeee..eehhhhhhhhh........eeee................eeeeee..eeeeeeeeee..........eeeee...hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5q0f A   16 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVGYGDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQAV  245
                                    25        35 ||     43        53     || 61    ||  69        79        89        99       109       119       129       139   ||  150       160       169       179     ||187       197       207       217       227       237        
                                               36A|                    58A|     65A|                                                                           143|                    168A             184A|                                                             
                                                36B                     58B      65B                                                                            145                                      184B                                                             


Chain H from PDB  Type:PROTEIN  Length:5
                                      
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
                 Transcript ----- Transcript
                5q0f H  362 CTTKI  366
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5Q0F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5Q0F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5Q0F)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5Q0F)

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UniProtKB/Swiss-Prot
        FA11_HUMAN | P03951: 1xx9 1xxd 1xxf 1zhm 1zhp 1zhr 1zjd 1zlr 1zmj 1zml 1zmn 1zom 1zpb 1zpc 1zpz 1zrk 1zsj 1zsk 1zsl 1ztj 1ztk 1ztl 2f83 2fda 2j8j 2j8l 3bg8 3sor 3sos 4cr5 4cr9 4cra 4crb 4crc 4crd 4cre 4crf 4crg 4d76 4d7f 4d7g 4na7 4na8 4ty6 4ty7 4wxi 4x6m 4x6n 4x6o 4x6p 4y8x 4y8y 4y8z 5e2o 5e2p 5eod 5eok 5exl 5exm 5exn 5i25 5q0d 5q0e 5q0g 5q0h 5tks 5tkt 5tku

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