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(-) Description

Title :  CRYSTAL STRUCTURE OF THE MOS1 STRAND TRANSFER COMPLEX
 
Authors :  J. M. Richardson, E. R. Morris
Date :  19 Jan 16  (Deposition) - 01 Jun 16  (Release) - 08 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Protein-Dna Complex, Dna Transposase, Recombinase, Integrase, Helix- Turn-Helix, Base Flipping, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. R. Morris, H. Grey, G. Mckenzie, A. C. Jones, J. M. Richardson
A Bend, Flip And Trap Mechanism For Transposon Integration.
Elife V. 5 2016
PubMed-ID: 27223327  |  Reference-DOI: 10.7554/ELIFE.15537

(-) Compounds

Molecule 1 - MARINER MOS1 TRANSPOSASE
    Chains: A, B
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: FULL-LENGTH MOS1 TRANSPOSASE
    Gene: MARINER
    Mutation: YES
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MAURITIANA
    Organism Taxid: 7226
    Synonym: TRANSPOSABLE ELEMENT MOS1 TRANSPOSASE
 
Molecule 2 - MOS1 IR DNA NTS
    Chains: C, E
    Engineered: YES
    Fragment: MOS1 IR DNA NTS
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: SYNTHETIC DNA
    Synthetic: YES
 
Molecule 3 - MOS1 IR TS JOINED TO TARGET DNA,MOS1 IR TS JOINED TO TARGET DNA
    Chains: D, F
    Engineered: YES
    Organism Common: FRUIT FLY
    Organism Scientific: SYNTHETIC CONSTRUCT, DROSOPHILA MAURITIANA
    Organism Taxid: 32630, 7226
    Other Details: SYNTHETIC DNA
    Synthetic: YES
 
Molecule 4 - TARGET DNA
    Chains: G, H
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MG2Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:156 , GLU A:157 , ASP A:249 , HOH A:501 , DC G:-1binding site for residue MG A 401
2AC2SOFTWAREASP B:156 , GLU B:157 , ASP B:249 , HOH B:501 , DC H:-1binding site for residue MG B 401

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:136 -A:336
2B:136 -B:336

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HOO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HOO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HOO)

(-) Exons   (0, 0)

(no "Exon" information available for 5HOO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.................hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhh..eeee..ee....hhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeeeee.......eeee........ee.......eeeeeeeee...eeeeeee......hhhhhhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhhhhhh.ee......hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hoo A   3 SFVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQALLDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNAARYQQQLINLNRALQRKRRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDEFYWRGIHKLPERWEKCVASDGKYFE 345
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232 ||    250       260       270       280       290       300       310       320       330       340     
                                                                                                                                                                                                                                                                 234|                                                                                                      
                                                                                                                                                                                                                                                                  243                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.................hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhh..eeee..ee....hhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeeeee.......eeee........ee.......eeeeeeeee...eeeeeee......hhhhhhhhhhhhhhhhhh.....eee...hhhhhhhhhhhhhhhhh.ee......hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hoo B   3 SFVPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQALLDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNAARYQQQLINLNRALQRKRPRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDEFYWRGIHKLPERWEKCVASDGKYFE 345
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232  ||   249       259       269       279       289       299       309       319       329       339      
                                                                                                                                                                                                                                                                  235|                                                                                                      
                                                                                                                                                                                                                                                                   243                                                                                                      


Chain C from PDB  Type:DNA  Length:25
                                                         
                 5hoo C   4 GGTGTACAAGTATGAAATGTCGTTT  28
                                    13        23     


Chain D from PDB  Type:DNA  Length:36
                                                                    
                 5hoo D  29 AAACGACATTTCATACTTGTACACCTGATAGCAGTG   7
                                    38        48       ||1      
                                                      56|       
                                                        0       


Chain E from PDB  Type:DNA  Length:25
                                                         
                 5hoo E   4 GGTGTACAAGTATGAAATGTCGTTT  28
                                    13        23     


Chain F from PDB  Type:DNA  Length:36
                                                                    
                 5hoo F  29 AAACGACATTTCATACTTGTACACCTGATAGCAGTG   7
                                    38        48       ||1      
                                                      56|       
                                                        0       


Chain G from PDB  Type:DNA  Length:10
                                          
                 5hoo G -10 GGCCCACTGC  -1
                                    -1


Chain H from PDB  Type:DNA  Length:10
                                          
                 5hoo H -10 GGCCCACTGC  -1
                                    -1
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HOO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HOO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HOO)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  5hoo
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  MOS1T_DROMA | Q7JQ07
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  3.1.-.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MOS1T_DROMA | Q7JQ07: 2f7t 3hos 3hot 4mda 4mdb 4r79 4u7b

(-) Related Entries Specified in the PDB File

3hos OTHER COMPLEXES OF MOS1 TRANSPOSASE AND DNA ALONG THE TRANSPOSITION PATHWAY
3hot OTHER COMPLEXES OF MOS1 TRANSPOSASE AND DNA ALONG THE TRANSPOSITION PATHWAY
4r79 OTHER COMPLEXES OF MOS1 TRANSPOSASE AND DNA ALONG THE TRANSPOSITION PATHWAY
4u7b OTHER COMPLEXES OF MOS1 TRANSPOSASE AND DNA ALONG THE TRANSPOSITION PATHWAY