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(-) Description

Title :  MOS1 TRANSPOSASE PAIRED-END COMPLEX WITH LEFT TRANSPOSON END
 
Authors :  J. M. Richardson
Date :  27 Aug 14  (Deposition) - 22 Apr 15  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Transposase, Protein-Dna Complex, Transpososome, Rnase-H Like Catalytic Fold Helix-Turn-Helix, Dna Transposition, Dna Cleavage, Dna Integration, Transposon, Inverted Repeats, Recombination-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Trubitsyna, H. Grey, D. R. Houston, D. J. Finnegan, J. M. Richardson
Structural Basis For The Inverted Repeat Preferences Of Mariner Transposases.
J. Biol. Chem. V. 290 13531 2015
PubMed-ID: 25869132  |  Reference-DOI: 10.1074/JBC.M115.636704

(-) Compounds

Molecule 1 - LEFT INVERTED REPEAT NTS
    Chains: C, E, G
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: SYNTHESISED BY IDT
    Synthetic: YES
 
Molecule 2 - LEFT INVERTED REPEAT TS
    Chains: D, F
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: SYNTHESISED BY IDT
    Synthetic: YES
 
Molecule 3 - LEFT INVERTED REPEAT NTS H
    Chains: H
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: SYNTHESISED BY IDT
    Synthetic: YES
 
Molecule 4 - MARINER MOS1 TRANSPOSASE
    Chains: A, B
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: MARINERT, T
    Mutation: YES
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MAURITIANA
    Organism Taxid: 7226
    Synonym: TRANSPOSABLE ELEMENT MOS1 TRANSPOSASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1MN2Ligand/IonMANGANESE (II) ION
2SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:71 , DT D:45BINDING SITE FOR RESIDUE SO4 D 101
2AC2SOFTWAREASP B:156 , ASP B:249 , DC H:53 , DT H:54BINDING SITE FOR RESIDUE MN H 101
3AC3SOFTWAREASP A:156 , ASP A:249BINDING SITE FOR RESIDUE MN A 401
4AC4SOFTWAREARG B:71 , DT F:45BINDING SITE FOR RESIDUE SO4 B 401

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:136 -A:336
2B:136 -B:336

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4R79)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4R79)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4R79)

(-) Exons   (0, 0)

(no "Exon" information available for 4R79)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhh..................hhhhhhhhhh.....hhhhhhh....hhhhhhhhhhhh..eeee..ee....hhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeeeee.......eeee........ee.......eeeeeeeee..eeeeeee.......hhhhhhhhhhhhhhhhhhhh....eeee........hhhhhhhhhh..eee......hhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4r79 A   5 VPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQALLDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDEFYWRGIHKLPERWEKCVASDGKYFE 345
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234  ||   249       259       269       279       289       299       309       319       329       339      
                                                                                                                                                                                                                                                                  237|                                                                                                      
                                                                                                                                                                                                                                                                   243                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhh..................hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhh..eeee..ee....hhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeeeee.......eeee........ee.......eeeeeeeee..eeeeeee.......hhhhhhhhhhhhhhhhhhhh.....eee...hhhhhhhhhhhhhhh...ee......hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4r79 B   5 VPNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQALLDEDDAQTQKQLAEQLEVSQQAVSNRLREMGKIQKVGRWVPHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDEFYWRGIHKLPERWEKCVASDGKYFE 345
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234  ||   249       259       269       279       289       299       309       319       329       339      
                                                                                                                                                                                                                                                                  237|                                                                                                      
                                                                                                                                                                                                                                                                   243                                                                                                      


Chain C from PDB  Type:DNA  Length:25
                                                         
                 4r79 C   4 GGTGTACAAGTAGGGAATGTCGGTT  28
                                    13        23     


Chain D from PDB  Type:DNA  Length:28
                                                            
                 4r79 D  29 AACCGACATTCCCTACTTGTACACCTGG  56
                                    38        48        


Chain E from PDB  Type:DNA  Length:25
                                                         
                 4r79 E   4 GGTGTACAAGTAGGGAATGTCGGTT  28
                                    13        23     


Chain F from PDB  Type:DNA  Length:28
                                                            
                 4r79 F  29 AACCGACATTCCCTACTTGTACACCTGG  56
                                    38        48        


Chain G from PDB  Type:DNA  Length:25
                                                         
                 4r79 G   4 GGTGTACAAGTAGGGAATGTCGGTT  28
                                    13        23     


Chain H from PDB  Type:DNA  Length:27
                                                           
                 4r79 H  29 AACCGACATTCCCTACTTGTACACCTG  55
                                    38        48
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4R79)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4R79)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4R79)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  4r79
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  MOS1T_DROMA | Q7JQ07
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  3.1.-.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MOS1T_DROMA | Q7JQ07: 2f7t 3hos 3hot 4mda 4mdb 4u7b 5hoo

(-) Related Entries Specified in the PDB File

2f7t MOS1 TRANSPOSASE CATALYTIC DOMAIN
3hos MOS1 PEC WITH IRR AND MG
3hot MOS1 PEC WITH IRR AND MN
4u7b MOS1 PRE-CLEAVAGE PEC