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(-) Description

Title :  STRUCTURE OF MOS1 TRANSPOSASE CATALYTIC DOMAIN AND RALTEGRAVIR WITH MN
 
Authors :  J. M. Richardson
Date :  22 Aug 13  (Deposition) - 22 Jan 14  (Release) - 07 May 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Rnase-H Fold, Ddd Motif, Recombinase, Dna Transposition, Dna Integration, Transposon Dna, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. M. Wolkowicz, E. R. Morris, M. Robson, M. Trubitsyna, J. M. Richardson
Structural Basis Of Mos1 Transposase Inhibition By The Anti-Retroviral Drug Raltegravir.
Acs Chem. Biol. V. 9 743 2014
PubMed-ID: 24397848  |  Reference-DOI: 10.1021/CB400791U

(-) Compounds

Molecule 1 - MARINER MOS1 TRANSPOSASE
    Chains: A
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: CATALYTIC DOMAIN (UNP RESIDUES 211-345)
    Gene: MARINERT
    Mutation: YES
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MAURITIANA
    Organism Taxid: 7226
    Synonym: MOS1 DNA TRANSPOSASE, TRANSPOSABLE ELEMENT MOS1 TRANSPOSASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1MN2Ligand/IonMANGANESE (II) ION
2RLT1Ligand/IonN-(4-FLUOROBENZYL)-5-HYDROXY-1-METHYL-2-(1-METHYL-1-{[(5-METHYL-1,3,4-OXADIAZOL-2-YL)CARBONYL]AMINO}ETHYL)-6-OXO-1,6-DIHYDROPYRIMIDINE-4-CARBOXAMIDE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:156 , ASP A:249 , MN A:402 , RLT A:403 , HOH A:552 , HOH A:555BINDING SITE FOR RESIDUE MN A 401
2AC2SOFTWAREASP A:156 , ASP A:284 , MN A:401 , RLT A:403 , HOH A:536BINDING SITE FOR RESIDUE MN A 402
3AC3SOFTWAREASP A:156 , ASP A:249 , ASN A:250 , ALA A:251 , ALA A:275 , TYR A:276 , ASP A:284 , SER A:302 , GLU A:304 , SER A:305 , LYS A:308 , MN A:401 , MN A:402 , HOH A:552 , HOH A:555BINDING SITE FOR RESIDUE RLT A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4MDA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4MDA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4MDA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4MDA)

(-) Exons   (0, 0)

(no "Exon" information available for 4MDA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhh.hhh.eeeeeeeeee...eeeeeeeee..eeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh.....eee...hhhhhhhhhhhhhhhhh.ee......hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4mda A 121 PHELNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVKKTMLCVWWDQSGVIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPSHTARAVRDTLETLNWEVLPHAAYSPDLAPSDYHLFASMGHALAEQRFDSYESVKKWLDEWFAAKDDEFYWRGIHKLPERWEKCVASDGKYFE 345
                                   130       140       150       160  ||   195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345
                                                                    163|                                                                                                                                                            
                                                                     189
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4MDA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4MDA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4MDA)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  MOS1T_DROMA | Q7JQ07
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MOS1T_DROMA | Q7JQ07: 2f7t 3hos 3hot 4mdb 4r79 4u7b 5hoo

(-) Related Entries Specified in the PDB File

2f7t MOS1 CATALYTIC DOMAIN STRUCTURE
3hos MOS1 TRANSPOSASE PAIRED-END COMPLEX WITH DNA AND MG
3hot MOS1 TRANSPOSASE PAIRED-END COMPLEX WITH DNA AND MN
4mdb CO-CRYSTAL STRUCTURE OF MOS1 TRANSPOSASE AND RALTEGRAVIR WITH MG