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(-) Description

Title :  E. COLI PBP1B IN COMPLEX WITH ACYL-CEPHALEXIN AND MOENOMYCIN
 
Authors :  D. T. King, N. C. J. Strynadka
Date :  14 Jan 16  (Deposition) - 14 Dec 16  (Release) - 14 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.36
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  A  (1x)
Keywords :  Penicillin-Binding Protein, Inhibitor Complex, Transpeptidase, Transglycosylase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. T. King, G. A. Wasney, M. Nosella, A. Fong, N. C. Strynadka
Escherichia Coli Penicillin-Binding Protein 1B: Structural Insights Into Inhibition.
J. Biol. Chem. 2016
PubMed-ID: 27899450  |  Reference-DOI: 10.1074/JBC.M116.718403

(-) Compounds

Molecule 1 - PENICILLIN-BINDING PROTEIN 1B
    Chains: A
    EC Number: 2.4.1.129, 3.4.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MRCB, PBPF, PONB, B0149, JW0145
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
    Synonym: PBP1B,MUREIN POLYMERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A
Biological Unit 2 (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
163U1Ligand/Ion(2S)-2-[(1R)-1-{[(2R)-2-AMINO-2-PHENYLACETYL]AMINO}-2-OXOETHYL]-5-METHYL-3,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLIC ACID
2M0E1Ligand/IonMOENOMYCIN
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
163U2Ligand/Ion(2S)-2-[(1R)-1-{[(2R)-2-AMINO-2-PHENYLACETYL]AMINO}-2-OXOETHYL]-5-METHYL-3,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLIC ACID
2M0E2Ligand/IonMOENOMYCIN
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
163U1Ligand/Ion(2S)-2-[(1R)-1-{[(2R)-2-AMINO-2-PHENYLACETYL]AMINO}-2-OXOETHYL]-5-METHYL-3,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLIC ACID
2M0E1Ligand/IonMOENOMYCIN

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:510 , LYS A:513 , ASP A:553 , SER A:572 , ASN A:574 , THR A:682 , THR A:699 , GLY A:700 , THR A:701 , ASN A:703 , HOH A:1025binding site for residue 63U A 901
2AC2SOFTWAREGLU A:233 , GLN A:271 , LYS A:274 , ASN A:275 , TYR A:315 , GLU A:323 , VAL A:354 , LYS A:355 , GLY A:356 , ALA A:357 , SER A:358 , ILE A:359binding site for residue M0E A 902

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HLA)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:429 -Val A:430
2Asn A:544 -Gly A:545

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HLA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HLA)

(-) Exons   (0, 0)

(no "Exon" information available for 5HLA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:697
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeee....ee......hhhhhhhhhhh...ee........eeee...eeeeee..ee....ee..eeeeeeee..eeeeeee....ee...ee....eeeee.....ee.........hhhhhhhhhhhh.......hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh...eeeee..eeeehhhhhhhhhh..hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh........hhhhhh.............hhhhhhhhhhhhhhhhh.........eeee..hhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....eeeee.................ee.hhhhhhhhhhhhh..........eee.....ee.....ee.............eeehhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..hhhhhhh..eehhhhhhhhhhhhhh..ee.....eeeee.....eeee.....ee..hhhhhhhhhhhhhhhhhh..hhhhhh.hhhhh.eeeeee.hhh.eeeeeee...eeeeeeee.............hhhhhhhhhhhh.............eeeeee.....ee.....eeeeee.....hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hla A  67 WLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYETLTQQLVKNLFLSKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMALGLPAVTETWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRILPVWTSDPQSLCQQSEM 799
                                    76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236  ||   273     ||290       300       310       320       330       340       350       360       370       380       390       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       
                                                                                                                                                                                                      239|         279|                                                                                                             399|                                                                                                                                                                                                                                                                                                                                                                                                             
                                                                                                                                                                                                       267          287                                                                                                              402
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HLA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HLA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HLA)

(-) Gene Ontology  (21, 21)

Asymmetric Unit(hide GO term definitions)

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    Lys A:429 - Val A:430   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PBPB_ECOLI | P02919: 3fwl 3vma 5fgz 5hl9 5hlb 5hld

(-) Related Entries Specified in the PDB File

5hl9 5hlb 5hld