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(-) Description

Title :  E. COLI PBP1B IN COMPLEX WITH FPI-1465
 
Authors :  D. T. King, N. C. J. Strynadka
Date :  21 Dec 15  (Deposition) - 20 Jan 16  (Release) - 27 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym./Biol. Unit :  A
Keywords :  Penicillin-Binding-Protein, Inhibitor, Complex, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. King, D. T. King, S. French, E. Brouillette, A. Asli, J. A. Alexander, M. Vuckovic, S. N. Maiti, T. R. Parr, E. D. Brown, F. Malouin, N. C. Strynadka, G. D. Wright
Structural And Kinetic Characterization Of Diazabicyclooctanes As Dual Inhibitors Of Both Serine-Beta-Lactamases And Penicillin-Binding Proteins.
Acs Chem. Biol. V. 11 864 2016
PubMed-ID: 26731698  |  Reference-DOI: 10.1021/ACSCHEMBIO.5B00944

(-) Compounds

Molecule 1 - PENICILLIN-BINDING PROTEIN 1B
    Chains: A
    EC Number: 2.4.1.129, 3.4.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MRCB, PBPF, PONB, B0149, JW0145
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
    Synonym: PBP1B,MUREIN POLYMERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
15VW1Ligand/Ion[[(3~{R},6~{S})-1-METHANOYL-6-[[(3~{S})-PYRROLIDIN-3-YL]OXYCARBAMOYL]PIPERIDIN-3-YL]AMINO] HYDROGEN SULFATE
2M0E1Ligand/IonMOENOMYCIN

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:233 , GLN A:271 , LYS A:274 , ASN A:275 , GLU A:281 , TYR A:315 , GLU A:323 , VAL A:354 , LYS A:355 , GLY A:356 , ALA A:357 , SER A:358binding site for residue M0E A 901
2AC2SOFTWARESER A:510 , LYS A:513 , SER A:572 , LEU A:611 , THR A:682 , THR A:699 , GLY A:700 , THR A:701 , THR A:702 , ASN A:703 , HOH A:1001binding site for residue 5VW A 902

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FGZ)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Leu A:72 -Ala A:73
2Pro A:403 -Arg A:404
3Asn A:544 -Gly A:545

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FGZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FGZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5FGZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:697
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh........eee...eee......hhhhhhhhhhh...ee........eeee...eeeeee..ee....ee..eeeeeeee..eeeeeee.........eee...eeee......ee....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..eeeehhhhhhhhhh..hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh......hhhhhhhhhhh.............hhhhhhhhhhhhhhhhh.........eeee..hhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....eeeee.................ee.hhhhhhhhhhhhhh.........eee.....ee.....ee.............eeehhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..hhhhhhh..eehhhhhhhhhhhhhh..ee.....eeeee.....eeee.....ee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.eeeeee.hhh.eeeeeee...eeeeeeee...........hhhhhhhhhhhhhhh............eeeeee.....ee.....eeeeee....hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fgz A  72 LAIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLVDTLLATEDTLTQQLVKNLFLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMALGLPAVTETWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRILPVWTSDPQSLCQQSEMQ 800
                                    81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  ||   273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       
                                                                                                                                                                                            234|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                                                                                                                                                                                             267
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FGZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FGZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FGZ)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:544 - Gly A:545   [ RasMol ]  
    Leu A:72 - Ala A:73   [ RasMol ]  
    Pro A:403 - Arg A:404   [ RasMol ]  
 

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  5fgz
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  PBPB_ECOLI | P02919
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  2.4.1.129
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  3.4.-.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PBPB_ECOLI | P02919: 3fwl 3vma 5hl9 5hla 5hlb 5hld

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5FGZ)