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(-) Description

Title :  E. COLI PBP1B IN COMPLEX WITH ACYL-CENTA AND MOENOMYCIN
 
Authors :  D. T. King, N. C. J. Strynadka
Date :  14 Jan 16  (Deposition) - 14 Dec 16  (Release) - 14 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.31
Chains :  Asym./Biol. Unit :  A
Keywords :  Penicillin-Binding Protein, Inhibitor Complex, Transpeptidase, Transglycosylase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. T. King, G. A. Wasney, M. Nosella, A. Fong, N. C. Strynadka
Escherichia Coli Penicillin-Binding Protein 1B: Structural Insights Into Inhibition.
J. Biol. Chem. 2016
PubMed-ID: 27899450  |  Reference-DOI: 10.1074/JBC.M116.718403

(-) Compounds

Molecule 1 - PENICILLIN-BINDING PROTEIN 1B
    Chains: A
    EC Number: 2.4.1.129, 3.4.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MRCB, PBPF, PONB, B0149, JW0145
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
    Synonym: PBP1B,MUREIN POLYMERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
163V1Ligand/Ion(2S)-5-METHYLIDENE-2-{(1R)-2-OXO-1-[(THIOPHEN-2-YLACETYL)AMINO]ETHYL}-5,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLIC ACID
2M0E1Ligand/IonMOENOMYCIN

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:510 , ASP A:553 , SER A:572 , ASN A:574 , THR A:682 , THR A:699 , THR A:701 , THR A:702 , ASN A:703 , HOH A:1062binding site for residue 63V A 901
2AC2SOFTWAREGLU A:233 , GLN A:271 , LYS A:274 , ASN A:275 , TYR A:315 , GLU A:323 , HOH A:1080binding site for residue M0E A 902

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HLD)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Leu A:230 -Ala A:231
2Ala A:231 -Thr A:232
3Pro A:543 -Asn A:544

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HLD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HLD)

(-) Exons   (0, 0)

(no "Exon" information available for 5HLD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:649
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhh........eee....ee......hhhhhhhhhhhh..ee........eeee...eeeeee............eeeeeeee..eeeeeee....ee...ee....eeee......ee....hhhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...eeeee..eeeehhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhh........hhhhhhhhhhhhhhhh..........eeee..hhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeee.....eeeee..........hhhhhh.ee.hhhhhhhhhhhhhh.........eee.....ee.....ee.............eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..hhhhh....eehhhhhhhhhhhhhh..ee.....eeeee.....eeee.....ee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh....eee.hhh.eeeeeee...eeeeeeee.............hhhhhhhhhhhh.............eeeeee.....ee.....eeeeee....hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hld A  73 AIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLVDTLLATETQQLVKNLFLSKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVLALERRNLVLRLLYDMLSARPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMALGLPAVTETWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRILPVWTSDPQSLCQQSE 798
                                    82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232||     277 ||    294       304       314       324       334       344       354|      377  ||   397|      419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789         
                                                                                                                                                                                          233|       279|                                                                354|         380|   397|                                                                                                                                                                                                                                                                                                                                                                                                    
                                                                                                                                                                                           269        287                                                                 368          391    410
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HLD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HLD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HLD)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:231 - Thr A:232   [ RasMol ]  
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    Pro A:543 - Asn A:544   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PBPB_ECOLI | P02919: 3fwl 3vma 5fgz 5hl9 5hla 5hlb

(-) Related Entries Specified in the PDB File

5hl9 5hla 5hlb