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(-) Description

Title :  E. COLI PBP1B IN COMPLEX WITH ACYL-AZTREONAM AND MOENOMYCIN
 
Authors :  D. T. King, N. C. J. Strynadka
Date :  14 Jan 16  (Deposition) - 14 Dec 16  (Release) - 14 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.42
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Penicillin-Binding Protein, Inhibitor Complex, Transpeptidase, Transglycosylase, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. T. King, G. A. Wasney, M. Nosella, A. Fong, N. C. Strynadka
Escherichia Coli Penicillin-Binding Protein 1B: Structural Insights Into Inhibition.
J. Biol. Chem. 2016
PubMed-ID: 27899450  |  Reference-DOI: 10.1074/JBC.M116.718403

(-) Compounds

Molecule 1 - PENICILLIN-BINDING PROTEIN 1B
    Chains: A
    EC Number: 2.4.1.129, 3.4.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MRCB, PBPF, PONB, B0149, JW0145
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Strain: K12
    Synonym: PBP1B,MUREIN POLYMERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1AZR1Ligand/Ion2-({[(1Z)-1-(2-AMINO-1,3-THIAZOL-4-YL)-2-OXO-2-{[(2S,3S)-1-OXO-3-(SULFOAMINO)BUTAN-2-YL]AMINO}ETHYLIDENE]AMINO}OXY)-2-METHYLPROPANOIC ACID
2M0E1Ligand/IonMOENOMYCIN
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1AZR2Ligand/Ion2-({[(1Z)-1-(2-AMINO-1,3-THIAZOL-4-YL)-2-OXO-2-{[(2S,3S)-1-OXO-3-(SULFOAMINO)BUTAN-2-YL]AMINO}ETHYLIDENE]AMINO}OXY)-2-METHYLPROPANOIC ACID
2M0E2Ligand/IonMOENOMYCIN

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:233 , VAL A:262 , GLY A:264 , SER A:266 , GLN A:271 , LYS A:274 , ASN A:275 , ARG A:286 , TYR A:315 , GLU A:323 , VAL A:354 , LYS A:355 , GLY A:356 , ALA A:357 , SER A:358binding site for residue M0E A 901
2AC2SOFTWARESER A:507 , SER A:510 , ASP A:553 , ASN A:574 , LEU A:611 , THR A:682 , THR A:699 , GLY A:700 , THR A:701 , THR A:702 , ASN A:703 , HOH A:1002 , HOH A:1011 , HOH A:1042binding site for residue AZR A 902

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HLB)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Trp A:67 -Leu A:68
2Gly A:177 -Asp A:178
3Glu A:239 -His A:240
4Ala A:258 -Gly A:259
5Arg A:260 -Thr A:261
6Val A:262 -Gln A:263
7Gly A:400 -Val A:401

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HLB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HLB)

(-) Exons   (0, 0)

(no "Exon" information available for 5HLB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:733
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........eee....ee......hhhhhhhhhhh...ee........eeee...eeeeee..ee....ee..eeeeeeee..eeeeeee.........ee....eeee......ee....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh.............hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheeeee..eeeehhhhhhhhhh..hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh......hhhhhhhh.............hhhhhhhhhhhhhhhhh.........eeee..hhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee.....eeeee..........hhhhhh.ee.hhhhhhhhhhhhhh.........eee.....ee.....ee.............eeehhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..hhhhhhh..eehhhhhhhhhhhhhh..ee.....eeeee.....eeee.....ee..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.eeeeee.hhh.eeeeeee...eeeeeeee...........hhhhhhhhhhhhhh.............eeeeee.....ee.....eeeeee....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hlb A  67 WLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMALGLPAVTETWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRILPVWTSDPQSLCQQSEM 799
                                    76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HLB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HLB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HLB)

(-) Gene Ontology  (21, 21)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:258 - Gly A:259   [ RasMol ]  
    Arg A:260 - Thr A:261   [ RasMol ]  
    Glu A:239 - His A:240   [ RasMol ]  
    Gly A:177 - Asp A:178   [ RasMol ]  
    Gly A:400 - Val A:401   [ RasMol ]  
    Trp A:67 - Leu A:68   [ RasMol ]  
    Val A:262 - Gln A:263   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PBPB_ECOLI | P02919: 3fwl 3vma 5fgz 5hl9 5hla 5hld

(-) Related Entries Specified in the PDB File

5hl9 5hla 5hld