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(-) Description

Title :  R2-LIKE LIGAND-BINDING OXIDASE WITH AEROBICALLY RECONSTITUTED MN/FE COFACTOR (RECONSTITUTED IN SOLUTION)
 
Authors :  J. J. Griese, M. Hogbom
Date :  03 Nov 15  (Deposition) - 27 Apr 16  (Release) - 16 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.07
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  R2-Like Ligand-Binding Oxidase, Diiron Cofactor, Ribonucleotide Reductase R2 Subunit Fold, Metalloprotein Oxidoreductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kutin, V. Srinivas, M. Fritz, R. Kositzki, H. S. Shafaat, J. Birrell E. Bill, M. Haumann, W. Lubitz, M. Hogbom, J. J. Griese, N. Cox
Divergent Assembly Mechanisms Of The Manganese/Iron Cofactors In R2Lox And R2C Proteins.
J. Inorg. Biochem. V. 162 164 2016
PubMed-ID: 27138102  |  Reference-DOI: 10.1016/J.JINORGBIO.2016.04.019

(-) Compounds

Molecule 1 - RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT
    Chains: A
    EC Number: 1.17.4.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-46 EK/LIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GK2771
    Organism Scientific: GEOBACILLUS KAUSTOPHILUS (STRAIN HTA426)
    Organism Taxid: 235909
    Synonym: R2-LIKE LIGAND-BINDING OXIDASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
1FE1Ligand/IonFE (III) ION
2MN31Ligand/IonMANGANESE (III) ION
3PLM1Ligand/IonPALMITIC ACID
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2MN32Ligand/IonMANGANESE (III) ION
3PLM2Ligand/IonPALMITIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:69 , GLU A:102 , HIS A:105 , FE A:402 , PLM A:403 , HOH A:501 , HOH A:502binding site for residue MN3 A 401
2AC2SOFTWAREGLU A:102 , GLU A:167 , GLU A:202 , HIS A:205 , MN3 A:401 , PLM A:403 , HOH A:502binding site for residue FE A 402
3AC3SOFTWARELEU A:61 , PHE A:65 , GLU A:69 , GLU A:102 , PHE A:135 , GLU A:167 , LEU A:170 , THR A:177 , GLU A:202 , MN3 A:401 , FE A:402 , HOH A:501 , HOH A:502binding site for residue PLM A 403

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh.....hhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh....hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ekb A   2 VHHDGFQTVKATIDWEHPMFKLYEKAKRNGKWNPADIDFSQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALARQGRLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVFHNDHYKRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKKAGLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERYYELFIRYMDELWPHVIGYVDYLTELGKRQQQLARTYALEIDYDLLRHYVIKQFNLRKKQISRT 286
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281
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 Classification and Annotation

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (5, 5)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5KW80_GEOKA | Q5KW80: 4hr0 4hr4 4hr5 4xb9 4xbv 4xbw 5dco 5dcr 5dcs

(-) Related Entries Specified in the PDB File

4hr0 4HR0 CONTAINS THE SAME PROTEIN WITH AEROBICALLY RECONSTITUTED MN/FE COFACTOR (SHORT SOAK, PROTEIN PURIFIED IN PARTIALLY METAL-BOUND FORM).
4hr4 4HR4 CONTAINS THE SAME PROTEIN WITH ANAEROBICALLY RECONSTITUTED MN/ FE COFACTOR.
4hr5 4HR5 CONTAINS THE SAME PROTEIN WITHOUT METAL COFACTOR.
4xb9 4XB9 CONTAINS THE SAME PROTEIN WITH AEROBICALLY RECONSTITUTED DIIRON COFACTOR (LONG SOAK).
4xbv 4XBV CONTAINS THE SAME PROTEIN WITH ANAEROBICALLY RECONSTITUTED DIIRON COFACTOR.
4xbw 4XBW CONTAINS THE SAME PROTEIN WITH AEROBICALLY RECONSTITUTED DIMANGANESE COFACTOR.
5dco 5DCO CONTAINS THE SAME PROTEIN WITH AEROBICALLY RECONSTITUTED DIIRON COFACTOR (SHORT SOAK).
5dcr 5DCR CONTAINS THE SAME PROTEIN WITH AEROBICALLY RECONSTITUTED MN/FE COFACTOR (SHORT SOAK).
5dcs 5DCS CONTAINS THE SAME PROTEIN WITH AEROBICALLY RECONSTITUTED MN/FE COFACTOR (LONG SOAK).