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(-) Description

Title :  R2-LIKE LIGAND-BINDING OXIDASE WITH AEROBICALLY RECONSTITUTED METAL COFACTOR
 
Authors :  J. J. Griese, M. Hogbom
Date :  26 Oct 12  (Deposition) - 16 Oct 13  (Release) - 06 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  R2-Like Ligand-Binding Oxidase, Heterodinuclear Mn/Fe Cofactor, Ribonucleotide Reductase R2 Subunit Fold, Metalloprotein, Manganese, Iron, Fatty Acid/Long-Chain Hydrocarbon Ligand, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. J. Griese, K. Roos, N. Cox, H. S. Shafaat, R. M. M. Branca, J. Lehtio, A. Graslund, W. Lubitz, P. E. M. Siegbahn, M. Hogbom
Direct Observation Of Structurally Encoded Metal Discrimination And Ether Bond Formation In A Heterodinuclea Metalloprotein
Proc. Natl. Acad. Sci. Usa V. 110 17189 2013
PubMed-ID: 24101498  |  Reference-DOI: 10.1073/PNAS.1304368110

(-) Compounds

Molecule 1 - RIBONULEOTIDE REDUCTASE SMALL SUBUNIT
    Chains: A
    EC Number: 1.17.4.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-46 EK/LIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GK2771
    Organism Scientific: GEOBACILLUS KAUSTOPHILUS
    Organism Taxid: 235909
    Strain: HTA246
    Synonym: R2-LIKE LIGAND-BINDING OXIDASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

Asymmetric Unit (5, 5)
No.NameCountTypeFull Name
1FE1Ligand/IonFE (III) ION
3MN1Ligand/IonMANGANESE (II) ION
2MN31Ligand/IonMANGANESE (III) ION
4NA1Ligand/IonSODIUM ION
5PLM1Ligand/IonPALMITIC ACID
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
3MN-1Ligand/IonMANGANESE (II) ION
2MN32Ligand/IonMANGANESE (III) ION
4NA-1Ligand/IonSODIUM ION
5PLM2Ligand/IonPALMITIC ACID

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:69 , GLU A:102 , HIS A:105 , FE A:402 , PLM A:405 , HOH A:502 , HOH A:562BINDING SITE FOR RESIDUE MN3 A 401
2AC2SOFTWAREGLU A:102 , GLU A:167 , GLU A:202 , HIS A:205 , MN3 A:401 , PLM A:405 , HOH A:502BINDING SITE FOR RESIDUE FE A 402
3AC3SOFTWAREHIS A:130BINDING SITE FOR RESIDUE MN A 403
4AC4SOFTWAREVAL A:10 , ALA A:12 , GLN A:113 , ILE A:118 , GLY A:119 , MET A:121BINDING SITE FOR RESIDUE NA A 404
5AC5SOFTWAREGLY A:64 , GLU A:69 , GLU A:102 , PHE A:135 , GLU A:167 , LEU A:170 , THR A:177 , GLU A:202 , MN3 A:401 , FE A:402 , HOH A:502 , HOH A:562BINDING SITE FOR RESIDUE PLM A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HR0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HR0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HR0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HR0)

(-) Exons   (0, 0)

(no "Exon" information available for 4HR0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:286
                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh.....hhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hr0 A   2 VHHDGFQTVKATIDWEHPMFKLYEKAKRNGKWNPADIDFSQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALARQGRLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVFHNDHYKRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKKAGLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERYYELFIRYMDELWPHVIGYVDYLTELGKRQQQLARTYALEIDYDLLRHYVIKQFNLRKKQISRTK 287
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HR0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HR0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HR0)

(-) Gene Ontology  (5, 5)

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 Related Entries

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        Q5KW80_GEOKA | Q5KW80: 4hr4 4hr5 4xb9 4xbv 4xbw 5dco 5dcr 5dcs 5ekb

(-) Related Entries Specified in the PDB File

4hr4 4hr5