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(-) Description

Title :  R2-LIKE LIGAND-BINDING OXIDASE WITH AEROBICALLY RECONSTITUTED DIMANGANESE COFACTOR
 
Authors :  J. J. Griese, M. Hogbom
Date :  17 Dec 14  (Deposition) - 09 Sep 15  (Release) - 28 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.99
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  R2-Like Ligand-Binding Oxidase, Dimanganese Cofactor, Ribonucleotide Reductase R2 Subunit Fold, Metalloprotein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. J. Griese, R. Kositzki, P. Schrapers, R. M. Branca, A. Nordstrom, J. Lehtio, M. Haumann, M. Hogbom
Structural Basis For Oxygen Activation At A Heterodinuclear Manganese/Iron Cofactor.
J. Biol. Chem. V. 290 25254 2015
PubMed-ID: 26324712  |  Reference-DOI: 10.1074/JBC.M115.675223

(-) Compounds

Molecule 1 - RIBONUCLEOTIDE REDUCTASE SMALL SUBUNIT
    Chains: A
    EC Number: 1.17.4.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-46 EK/LIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GK2771
    Organism Scientific: GEOBACILLUS KAUSTOPHILUS (STRAIN HTA426)
    Organism Taxid: 235909
    Synonym: R2-LIKE LIGAND-BINDING OXIDASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1MN3Ligand/IonMANGANESE (II) ION
2PLM1Ligand/IonPALMITIC ACID
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2PLM2Ligand/IonPALMITIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:69 , GLU A:102 , HIS A:105 , GLU A:202 , MN A:402 , PLM A:404binding site for residue MN A 401
2AC2SOFTWAREGLU A:102 , GLU A:167 , GLU A:202 , HIS A:205 , MN A:401 , PLM A:404binding site for residue MN A 402
3AC3SOFTWAREHIS A:130binding site for residue MN A 403
4AC4SOFTWAREGLY A:64 , PHE A:65 , GLU A:69 , VAL A:72 , GLU A:102 , HIS A:105 , PHE A:135 , GLU A:167 , LEU A:170 , THR A:177 , GLU A:202 , LEU A:268 , MN A:401 , MN A:402binding site for residue PLM A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XBW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XBW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xbw A  13 TIDWEHPMFKLYEKAKRNGKWNPADIDFSQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALARQGRLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVFHNDHYKRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKKAGLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERYYELFIRYMDELWPHVIGYVDYLTELGKRQQQLARTYALEIDYDLLRHYVIKQFNLRKKQISRT 286
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XBW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XBW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XBW)

(-) Gene Ontology  (5, 5)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5KW80_GEOKA | Q5KW80: 4hr0 4hr4 4hr5 4xb9 4xbv 5dco 5dcr 5dcs 5ekb

(-) Related Entries Specified in the PDB File

4hr0 4HR0 CONTAINS THE SAME PROTEIN WITH AEROBICALLY RECONSTITUTED MN/FE COFACTOR.
4hr4 4HR4 CONTAINS THE SAME PROTEIN WITH ANAEROBICALLY RECONSTITUTED MN/ FE COFACTOR.
4hr5 4HR5 CONTAINS THE SAME PROTEIN WITHOUT METAL COFACTOR.
4xb9 4XB9 CONTAINS THE SAME PROTEIN WITH AEROBICALLY RECONSTITUTED DIIRON COFACTOR.
4xbv 4XBV CONTAINS THE SAME PROTEIN WITH ANAEROBICALLY RECONSTITUTED DIIRON COFACTOR.