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(-) Description

Title :  R2-LIKE LIGAND-BINDING OXIDASE WITHOUT METAL COFACTOR
 
Authors :  J. J. Griese, M. Hogbom
Date :  26 Oct 12  (Deposition) - 16 Oct 13  (Release) - 06 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.29
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  R2-Like Ligand-Binding Oxidase, Heterodinuclear Mn/Fe Cofactor, Ribonucleotide Reductase R2 Subunit Fold, Metalloprotein, Manganese, Iron, Fatty Acid/Long-Chain Hydrocarbon Ligand, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. J. Griese, K. Roos, N. Cox, H. S. Shafaat, R. M. M. Branca, J. Lehtio, A. Graslund, W. Lubitz, P. E. M. Siegbahn, M. Hogbom
Direct Observation Of Structurally Encoded Metal Discrimination And Ether Bond Formation In A Heterodinuclea Metalloprotein
Proc. Natl. Acad. Sci. Usa V. 110 17189 2013
PubMed-ID: 24101498  |  Reference-DOI: 10.1073/PNAS.1304368110

(-) Compounds

Molecule 1 - RIBONULEOTIDE REDUCTASE SMALL SUBUNIT
    Chains: A
    EC Number: 1.17.4.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-46 EK/LIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GK2771
    Organism Scientific: GEOBACILLUS KAUSTOPHILUS
    Organism Taxid: 235909
    Strain: HTA246
    Synonym: R2-LIKE LIGAND-BINDING OXIDASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1PLM1Ligand/IonPALMITIC ACID
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1PLM2Ligand/IonPALMITIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:64 , GLY A:68 , GLU A:102 , HIS A:105 , PHE A:135 , TYR A:162 , VAL A:166 , GLU A:167 , LEU A:170 , GLU A:202BINDING SITE FOR RESIDUE PLM A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HR5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HR5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HR5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HR5)

(-) Exons   (0, 0)

(no "Exon" information available for 4HR5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:271
                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh....hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hr5 A  12 ATIDWEHPMFKLYEKAKRNGKWNPADIDFSQDQKDFASLTSEEKISALPLVAGFSAGTLDILPMAHALARQGRLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVFHNDHYKRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKKAGLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERYYELFIRYMDELWPHVIGYVDYLTELGKRQQQLARTYALEIDYDLLRHYVIKQFNLRKKQISRT 286
                                    21        31        41        51        61      ||75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285 
                                                                                   68|                                                                                                                                                                                                                     
                                                                                    73
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4HR5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4HR5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HR5)

(-) Gene Ontology  (5, 5)

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        Q5KW80_GEOKA | Q5KW80: 4hr0 4hr4 4xb9 4xbv 4xbw 5dco 5dcr 5dcs 5ekb

(-) Related Entries Specified in the PDB File

4hr0 R2-LIKE LIGAND-BINDING OXIDASE WITH AEROBICALLY RECONSTITUTED METAL COFACTOR
4hr4 R2-LIKE LIGAND-BINDING OXIDASE WITH ANAEROBICALLY RECONSTITUTED METAL COFACTOR