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Title :   STRUCTURE OF IRON-SATURATED C-LOBE OF BOVINE LACTOFERRIN AT PH 6.8 INDICATES THE SOFTENING OF IRON COORDINATION

Authors :   A. Singh, N. Rastogi, P. K. Singh, T. K. Tyagi, P. Kaur, S. Sharma, T. P. Si

Date :   23 Jul 15 (Deposition) - 14 Oct 15 (Release) - 14 Oct 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.79

Chains :   Asym./Biol. Unit : A,B

Keywords :   C-Lobe, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Singh, N. Rastogi, P. K. Singh, T. K. Tyagi, P. Kaur, S. Sharma, T. P. Singh
Structure Of Iron-Saturated C-Lobe Of Bovine Lactoferrin At Ph 7. 0 Indicates The Softening Of Iron Coordination
To Be Published
PubMed: search

Molecule 1 - LACTOTRANSFERRIN
	Chains	:	A, B
	EC Number	:	3.4.21.-
	Fragment	:	C-LOBE (UNP RESIDUES 361-708)
	Organism Common	:	BOVINE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Synonym	:	LACTOFERRIN

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 15)

No.	Name	Count	Type	Full Name
1	BCT	2	Ligand/Ion	BICARBONATE ION
2	BMA	3	Ligand/Ion	BETA-D-MANNOSE
3	FE	2	Ligand/Ion	FE (III) ION
4	NAG	8	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:395 , TYR A:433 , TYR A:526 , HIS A:595 , BCT A:705	binding site for residue FE A 704
2	AC2	SOFTWARE	ASP A:395 , TYR A:433 , THR A:459 , ARG A:463 , THR A:464 , ALA A:465 , GLY A:466 , TYR A:526 , FE A:704	binding site for residue BCT A 705
3	AC3	SOFTWARE	ASP B:395 , TYR B:433 , TYR B:526 , HIS B:595 , BCT B:707	binding site for residue FE B 706
4	AC4	SOFTWARE	ASP B:395 , TYR B:433 , THR B:459 , ARG B:463 , THR B:464 , ALA B:465 , GLY B:466 , TYR B:526 , FE B:706	binding site for residue BCT B 707
5	AC5	SOFTWARE	GLN A:364 , SER A:365 , ASN A:368 , HIS A:613 , GLN A:614 , LEU A:617 , HOH A:816	binding site for Poly-Saccharide residues NAG A 701 through BMA A 703 bound to ASN A 368
6	AC6	SOFTWARE	LEU A:434 , ASN A:545 , ASP A:546 , TRP A:549 , GLN A:585	binding site for Poly-Saccharide residues NAG A 706 through BMA A 708 bound to ASN A 545
7	AC7	SOFTWARE	SER B:365 , ASN B:368 , HIS B:613 , GLN B:614	binding site for Mono-Saccharide NAG B 704 bound to ASN B 368
8	AC8	SOFTWARE	ASN B:476	binding site for Mono-Saccharide NAG B 705 bound to ASN B 476
9	AC9	SOFTWARE	SER B:418 , LEU B:434 , ASN B:545 , ASP B:546 , TRP B:549 , GLN B:585	binding site for Poly-Saccharide residues NAG B 701 through BMA B 703 bound to ASN B 545

Asymmetric/Biological Unit

No.	Residues
1	A:348	-	A:380
2	A:358	-	A:371
3	A:405	-	A:684
4	A:425	-	A:647
5	A:457	-	A:532
6	A:481	-	A:675
7	A:491	-	A:505
8	A:502	-	A:515
9	A:573	-	A:587
10	A:625	-	A:630
11	B:348	-	B:380
12	B:358	-	B:371
13	B:405	-	B:684
14	B:425	-	B:647
15	B:457	-	B:532
16	B:481	-	B:675
17	B:491	-	B:505
18	B:502	-	B:515
19	B:573	-	B:587
20	B:625	-	B:630

Asymmetric/Biological Unit

No.	Residues
1	Cys A:625	-	Pro A:626
2	Cys B:625	-	Pro B:626

(no "SAP(SNP)/Variant" information available for 5CRY)

(no "PROSITE Motif" information available for 5CRY)

(no "Exon" information available for 5CRY)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:348
                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeehhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhh...eeeehhhhhhhhhhh..eeeeeee..................eeeeeeee......hhhhh...eeee........hhhhhhhhhhhhh..hhhhhh.eee.......hhhhh....................hhhhhhhhhhhh....eeeeehhhhhh..............hhh.eeee.....eehhhhhhh...eee...eeee...hhhhhhhhhhhhhhhhh...........................eee......hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cry A 342 YTRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLKREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAAHVEQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGGRPTYEEYLGTEYVTAIANLKKCSTSPLLEACAFLTR 689
                                   351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681

Chain B from PDB  Type:PROTEIN  Length:348
                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeehhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh...eeeehhhhhhhhhhh..eeeeeeee.................eeeeeeee......hhhhh...eee.........hhhhhhhhhhhhh..hhhhh..eee................................hhhhhhhhhhhh....eeeeehhhhhhh......hhhhhh.....eeee.....eehhhhhhhh..eee...eeee...hhhhhhhhhhhhhhhhh.........................eeeee......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cry B 342 YTRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLKREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAAHVEQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGGRPTYEEYLGTEYVTAIANLKKCSTSPLLEACAFLTR 689
                                   351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5CRY)

(no "CATH Domain" information available for 5CRY)

(no "Pfam Domain" information available for 5CRY)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Cys A:625 - Pro A:626	[ RasMol ]
		Cys B:625 - Pro B:626	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 15)

Sites (9, 9)

SS Bonds (20, 20)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

Sequences/Alignments

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Gene Ontology (50, 50)

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