1BLF - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURE OF DIFERRIC BOVINE LACTOFERRIN AT 2.8 ANGSTROMS RESOLUTION

Authors :   S. A. Moore, B. F. Anderson, C. R. Groom, M. Haridas, E. N. Baker

Date :   20 Aug 97 (Deposition) - 03 Dec 97 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym./Biol. Unit : A

Keywords :   Lactoferrin, Transferrin, Iron-Binding Protein, Carbohydrate Structure (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. A. Moore, B. F. Anderson, C. R. Groom, M. Haridas, E. N. Baker
Three-Dimensional Structure Of Diferric Bovine Lactoferrin At 2. 8 A Resolution.
J. Mol. Biol. V. 274 222 1997
PubMed-ID: 9398529 | Reference-DOI: 10.1006/JMBI.1997.1386

Molecule 1 - LACTOFERRIN
	Cellular Location	:	EXTRACELLULAR
	Chains	:	A
	Organism Common	:	CATTLE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Secretion	:	MILK
	Strain	:	FRESIAN JERSEY CROSS

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (5, 14)

No.	Name	Count	Type	Full Name
1	BMA	2	Ligand/Ion	BETA-D-MANNOSE
2	CO3	2	Ligand/Ion	CARBONATE ION
3	FE	2	Ligand/Ion	FE (III) ION
4	MAN	3	Ligand/Ion	ALPHA-D-MANNOSE
5	NAG	5	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLN A:364 , SER A:365 , ASN A:368 , HIS A:613 , GLN A:614 , LEU A:617	BINDING SITE FOR RESIDUE NAG A 690A
02	AC2	SOFTWARE	ASN A:476 , ASN A:671 , NAG A:692B	BINDING SITE FOR RESIDUE NAG A 691A
03	AC3	SOFTWARE	ASN A:671 , NAG A:691A , BMA A:693C	BINDING SITE FOR RESIDUE NAG A 692B
04	AC4	SOFTWARE	NAG A:692B	BINDING SITE FOR RESIDUE BMA A 693C
05	AC5	SOFTWARE	ASN A:545 , ASP A:546 , TRP A:549 , NAG A:695B	BINDING SITE FOR RESIDUE NAG A 694A
06	AC6	SOFTWARE	LYS A:416 , TRP A:549 , NAG A:694A , BMA A:696C , MAN A:697D , MAN A:698E	BINDING SITE FOR RESIDUE NAG A 695B
07	AC7	SOFTWARE	LYS A:416 , NAG A:695B , MAN A:697D	BINDING SITE FOR RESIDUE BMA A 696C
08	AC8	SOFTWARE	GLU A:51 , GLU A:555 , NAG A:695B , BMA A:696C , MAN A:698E , MAN A:699F	BINDING SITE FOR RESIDUE MAN A 697D
09	AC9	SOFTWARE	PRO A:71 , TRP A:549 , GLU A:555 , ARG A:566 , NAG A:695B , MAN A:697D	BINDING SITE FOR RESIDUE MAN A 698E
10	BC1	SOFTWARE	GLY A:554 , GLU A:555 , MAN A:697D	BINDING SITE FOR RESIDUE MAN A 699F
11	BC2	SOFTWARE	ASP A:60 , TYR A:92 , TYR A:192 , HIS A:253 , CO3 A:702	BINDING SITE FOR RESIDUE FE A 700
12	BC3	SOFTWARE	ASP A:395 , TYR A:433 , TYR A:526 , HIS A:595 , CO3 A:703	BINDING SITE FOR RESIDUE FE A 701
13	BC4	SOFTWARE	ASP A:60 , TYR A:92 , THR A:117 , ARG A:121 , SER A:122 , ALA A:123 , GLY A:124 , TYR A:192 , HIS A:253 , FE A:700	BINDING SITE FOR RESIDUE CO3 A 702
14	BC5	SOFTWARE	ASP A:395 , TYR A:433 , THR A:459 , ARG A:463 , THR A:464 , ALA A:465 , GLY A:466 , TYR A:526 , HIS A:595 , FE A:701	BINDING SITE FOR RESIDUE CO3 A 703
15	FE1	UNKNOWN	ASP A:60 , TYR A:92 , TYR A:192 , HIS A:253 , CO3 A:702	FE+3 BINDING SITE.
16	FE2	UNKNOWN	ASP A:395 , TYR A:433 , TYR A:526 , HIS A:595 , CO3 A:703	FE+3 BINDING SITE.

Asymmetric/Biological Unit

No.	Residues
1	A:9	-	A:45
2	A:19	-	A:36
3	A:115	-	A:198
4	A:157	-	A:173
5	A:160	-	A:183
6	A:170	-	A:181
7	A:231	-	A:245
8	A:348	-	A:380
9	A:358	-	A:371
10	A:405	-	A:684
11	A:425	-	A:647
12	A:457	-	A:532
13	A:481	-	A:675
14	A:491	-	A:505
15	A:502	-	A:515
16	A:573	-	A:587
17	A:625	-	A:630

Asymmetric/Biological Unit

No.	Residues
1	Ala A:31	-	Pro A:32
2	Asp A:70	-	Pro A:71
3	Cys A:625	-	Pro A:626

(no "SAP(SNP)/Variant" information available for 1BLF)

Asymmetric/Biological Unit (4, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	TRANSFERRIN_LIKE_4	PS51408	Transferrin-like domain profile.	TRFL_BOVIN	25-352 364-693	2	A:6-333 A:345-674
2	TRANSFERRIN_LIKE_1	PS00205	Transferrin-like domain signature 1.	TRFL_BOVIN	111-120 452-461	2	A:92-101 A:433-442
3	TRANSFERRIN_LIKE_2	PS00206	Transferrin-like domain signature 2.	TRFL_BOVIN	211-227 545-561	2	A:192-208 A:526-542
4	TRANSFERRIN_LIKE_3	PS00207	Transferrin-like domain signature 3.	TRFL_BOVIN	245-275 587-617	2	A:226-256 A:568-598

Asymmetric/Biological Unit (16, 16)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSBTAT00000001704	1	ENSBTAE00000406255	chr22:54313830-54314011	182	TRFL_BOVIN	1-15	15	0	-	-
1.2	ENSBTAT00000001704	2	ENSBTAE00000391946	chr22:54317754-54317917	164	TRFL_BOVIN	15-69	55	1	A:5-50	46
1.3	ENSBTAT00000001704	3	ENSBTAE00000378931	chr22:54320894-54321002	109	TRFL_BOVIN	70-106	37	1	A:51-87	37
1.4	ENSBTAT00000001704	4	ENSBTAE00000247433	chr22:54321299-54321481	183	TRFL_BOVIN	106-167	62	1	A:87-148	62
1.5	ENSBTAT00000001704	5	ENSBTAE00000013647	chr22:54322098-54322245	148	TRFL_BOVIN	167-216	50	1	A:148-197	50
1.6	ENSBTAT00000001704	6	ENSBTAE00000247432	chr22:54323189-54323244	56	TRFL_BOVIN	216-235	20	1	A:197-216	20
1.7	ENSBTAT00000001704	7	ENSBTAE00000013649	chr22:54328592-54328770	179	TRFL_BOVIN	235-294	60	1	A:216-275	60
1.8	ENSBTAT00000001704	8	ENSBTAE00000013654	chr22:54329198-54329372	175	TRFL_BOVIN	295-353	59	1	A:276-334	59
1.9	ENSBTAT00000001704	9	ENSBTAE00000013658	chr22:54329898-54330052	155	TRFL_BOVIN	353-404	52	1	A:334-385	52
1.10	ENSBTAT00000001704	10	ENSBTAE00000013661	chr22:54332009-54332099	91	TRFL_BOVIN	405-435	31	1	A:386-416	31
1.11	ENSBTAT00000001704	11	ENSBTAE00000013664	chr22:54334326-54334373	48	TRFL_BOVIN	435-451	17	1	A:416-432	17
1.12	ENSBTAT00000001704	12	ENSBTAE00000013668	chr22:54334997-54335152	156	TRFL_BOVIN	451-503	53	1	A:432-484	53
1.13	ENSBTAT00000001704	13	ENSBTAE00000013670	chr22:54337061-54337202	142	TRFL_BOVIN	503-550	48	1	A:484-531	48
1.14	ENSBTAT00000001704	14	ENSBTAE00000013674	chr22:54341961-54342028	68	TRFL_BOVIN	550-573	24	1	A:531-554	24
1.15	ENSBTAT00000001704	15	ENSBTAE00000013678	chr22:54343949-54344133	185	TRFL_BOVIN	573-634	62	1	A:554-615	62
1.16	ENSBTAT00000001704	16	ENSBTAE00000429733	chr22:54345264-54345453	190	TRFL_BOVIN	635-698	64	1	A:616-679	64
1.17	ENSBTAT00000001704	17	ENSBTAE00000407091	chr22:54347010-54347235	226	TRFL_BOVIN	698-708	11	1	A:679-689	11

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:685
 aligned with TRFL_BOVIN | P24627 from UniProtKB/Swiss-Prot  Length:708

    Alignment length:685
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703     
           TRFL_BOVIN    24 NVRWCTISQPEWFKCRRWQWRMKKLGAPSITCVRRAFALECIRAIAEKKADAVTLDGGMVFEAGRDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNFQLDQLQGRKSCHTGLGRSAGWIIPMGILRPYLSWTESLEPLQGAVAKFFSASCVPCIDRQAYPNLCQLCKGEGENQCACSSREPYFGYSGAFKCLQDGAGDVAFVKETTVFENLPEKADRDQYELLCLNNSRAPVDAFKECHLAQVPSHAVVARSVDGKEDLIWKLLSKAQEKFGKNKSRSFQLFGSPPGQRDLLFKDSALGFLRIPSKVDSALYLGSRYLTTLKNLRETAEEVKARYTRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLNREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAAHVKQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGGRPTYEEYLGTEYVTAIANLKKCSTSPLLEACAFLTR 708
               SCOP domains d1blfa1 A:5-333 Lactoferrin                                                                                                                                                                                                                                                                                                              d1blfa2 A:334-689 Lactoferrin                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 1blfA01 A:5-91,A:251-339 Periplasmic binding protein-like II                           1blfA02 A:92-250 Periplasmic binding protein-like II                                                                                                           1blfA01 A:5-91,A:251-339 Periplasmic binding protein-like II                             1blfA03 A:340-432,A:595-689 Periplasmic binding protein-like II                              1blfA04 A:433-594 Periplasmic binding protein-like II                                                                                                             1blfA03 A:340-432,A:595-689 Periplasmic binding protein-like II                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhh......eee.hhhhhhhh.....eeeeeeee.........eeeeeeeee..............eee.........hhhhhhhhhhh........hhhhhh.....eee........hhh.....................hhhhhhhhhh.....eeeee..hhhhh...hhhhhheee..................eeee..eeeee.....hhhhhhhhhhhhhh............................eeee......hhhhh.hhhhhhhhhhh..hhhhhhhhh.eeeeee.hhhhhhhhhhhhh....eeeeee..hhhhhhhhhh....eeee.hhhhhhhhhh..eeeeeeee.................eeeeeeee........hhh...eeee.........hhhhhhhhhhh....hhh...eee.................................hhhhhhhhhh.....eeeeehhhhhh...............hhheeee.....eee.........eee...eeee....hhhhhhhhhhhhhhh..........................eeeeee......hhhhh.hhhhhhhhhhhh....hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -TRANSFERRIN_LIKE_4  PDB: A:6-333 UniProt: 25-352                                                                                                                                                                                                                                                                                        -----------TRANSFERRIN_LIKE_4  PDB: A:345-674 UniProt: 364-693                                                                                                                                                                                                                                                                                       --------------- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------TRANSFERRI------------------------------------------------------------------------------------------TRANSFERRIN_LIKE_-----------------TRANSFERRIN_LIKE_3             --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRANSFERRI-----------------------------------------------------------------------------------TRANSFERRIN_LIKE_-------------------------TRANSFERRIN_LIKE_3             ------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.2  PDB: A:5-50 UniProt: 15-69          Exon 1.3  PDB: A:51-87               ------------------------------------------------------------Exon 1.5  PDB: A:148-197 UniProt: 167-216         ------------------Exon 1.7  PDB: A:216-275 UniProt: 235-294                   Exon 1.8  PDB: A:276-334 UniProt: 295-353                  ---------------------------------------------------Exon 1.10  PDB: A:386-416      ---------------Exon 1.12  PDB: A:432-484 UniProt: 451-503           ----------------------------------------------Exon 1.14  PDB: A:531-55-------------------------------------------------------------Exon 1.16  PDB: A:616-679 UniProt: 635-698                      ---------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------Exon 1.4  PDB: A:87-148 UniProt: 106-167                      ------------------------------------------------Exon 1.6            ---------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: A:334-385 UniProt: 353-404           ------------------------------Exon 1.11        ---------------------------------------------------Exon 1.13  PDB: A:484-531 UniProt: 503-550      ----------------------Exon 1.15  PDB: A:554-615 UniProt: 573-634                    ---------------------------------------------------------------Exon 1.17   Transcript 1 (2)
                 1blf A   5 NVRWCTISQPEWFKCRRWQWRMKKLGAPSITCVRRAFALECIRAIAEKKADAVTLDGGMVFEAGRDPYKLRPVAAEIYGTKESPQTHYYAVAVVKKGSNFQLDQLQGRKSCHTGLGRSAGWIIPMGILRPYLSWTESLEPLQGAVAKFFSASCVPCIDRQAYPNLCQLCKGEGENQCACSSREPYFGYSGAFKCLQDGAGDVAFVKETTVFENLPEKADRDQYELLCLNNSRAPVDAFKECHLAQVPSHAVVARSVDGKEDLIWKLLSKAQEKFGKNKSRSFQLFGSPPGQRDLLFKDSALGFLRIPSKVDSALYLGSRYLTTLKNLRETAEEVKARYTRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLNREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAAHVKQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGGRPTYEEYLGTEYVTAIANLKKCSTSPLLEACAFLTR 689
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Periplasmic binding protein-like II (813)

Superfamily: Periplasmic binding protein-like II (813)

Family: Transferrin (82)

Protein domain: Lactoferrin (42)

Cow (Bos taurus) [TaxId: 9913] (8)

1a	d1blfa1	A:5-333
1b	d1blfa2	A:334-689

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: D-Maltodextrin-Binding Protein; domain 2 (600)

Homologous Superfamily: Periplasmic binding protein-like II (486)

Cattle (Bos taurus) (37)

1a	1blfA02	A:92-250
1b	1blfA04	A:433-594
1c	1blfA01	A:5-91,A:251-339
1d	1blfA03	A:340-432,A:595-689

(no "Pfam Domain" information available for 1BLF)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (TRFL_BOVIN | P24627)

molecular function
	GO:0008201	heparin binding	Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0043539	protein serine/threonine kinase activator activity	Binds to and increases the activity of a protein serine/threonine kinase.
	GO:0005102	receptor binding	Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
	GO:0004252	serine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
	GO:0019731	antibacterial humoral response	An immune response against bacteria mediated through a body fluid. Examples of this process are the antibacterial humoral responses in Mus musculus and Drosophila melanogaster.
	GO:0019732	antifungal humoral response	An immune response against a fungus mediated through a body fluid. An example of this process is the antifungal humoral response in Drosophila melanogaster.
	GO:0060349	bone morphogenesis	The process in which bones are generated and organized.
	GO:0042742	defense response to bacterium	Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
	GO:0002376	immune system process	Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
	GO:0002227	innate immune response in mucosa	Any process of the innate immune response that takes place in the mucosal tissues.
	GO:0006811	ion transport	The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0055072	iron ion homeostasis	Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell.
	GO:0044793	negative regulation by host of viral process	A process in which a host organism stops, prevents or reduces the frequency, rate or extent of a process being mediated by a virus with which it is infected.
	GO:0032780	negative regulation of ATPase activity	Any process that stops or reduces the rate of ATP hydrolysis by an ATPase.
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:0031665	negative regulation of lipopolysaccharide-mediated signaling pathway	Any process that stops, prevents, or reduces the frequency, rate or extent of signaling in response to detection of lipopolysaccharide.
	GO:2001205	negative regulation of osteoclast development	Any process that stops, prevents or reduces the frequency, rate or extent of osteoclast development.
	GO:1900229	negative regulation of single-species biofilm formation in or on host organism	Any process that stops, prevents or reduces the frequency, rate or extent of single-species biofilm formation in or on host organism.
	GO:2000308	negative regulation of tumor necrosis factor (ligand) superfamily member 11 production	Any process that stops, prevents or reduces the frequency, rate or extent of tumor necrosis factor (ligand) superfamily member 11 production.
	GO:0045071	negative regulation of viral genome replication	Any process that stops, prevents, or reduces the frequency, rate or extent of viral genome replication.
	GO:0048525	negative regulation of viral process	Any process that stops, prevents, or reduces the frequency, rate or extent of a multi-organism process in which a virus is a participant.
	GO:0001503	ossification	The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance.
	GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	Any process that activates or increases the frequency, rate or extent of I-kappaB kinase/NF-kappaB signaling.
	GO:0051092	positive regulation of NF-kappaB transcription factor activity	Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB.
	GO:1900159	positive regulation of bone mineralization involved in bone maturation	Any process that activates or increases the frequency, rate or extent of bone mineralization involved in bone maturation.
	GO:1902732	positive regulation of chondrocyte proliferation	Any process that increases the frequency, rate or extent of the multiplication or reproduction of chondrocytes by cell division, resulting in the expansion of their population. A chondrocyte is a polymorphic cell that forms cartilage.
	GO:0045669	positive regulation of osteoblast differentiation	Any process that activates or increases the frequency, rate or extent of osteoblast differentiation.
	GO:0033690	positive regulation of osteoblast proliferation	Any process that activates or increases the rate or extent of osteoblast proliferation.
	GO:0071902	positive regulation of protein serine/threonine kinase activity	Any process that increases the rate, frequency, or extent of protein serine/threonine kinase activity.
	GO:0034145	positive regulation of toll-like receptor 4 signaling pathway	Any process that activates or increases the frequency, rate, or extent of toll-like receptor 4 signaling pathway.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0001817	regulation of cytokine production	Any process that modulates the frequency, rate, or extent of production of a cytokine.
	GO:0032680	regulation of tumor necrosis factor production	Any process that modulates the frequency, rate, or extent of tumor necrosis factor production.
	GO:0001895	retina homeostasis	A tissue homeostatic process involved in the maintenance of an internal equilibrium within the retina of the eye, including control of cellular proliferation and death and control of metabolic function.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0009986	cell surface	The external part of the cell wall and/or plasma membrane.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0043234	protein complex	A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
	GO:0030141	secretory granule	A small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion. Secretory granules move towards the periphery of the cell and upon stimulation, their membranes fuse with the cell membrane, and their protein load is exteriorized. Processing of the contained protein may take place in secretory granules.
	GO:0042581	specific granule	Granule with a membranous, tubular internal structure, found primarily in mature neutrophil cells. Most are released into the extracellular fluid. Specific granules contain lactoferrin, lysozyme, vitamin B12 binding protein and elastase.

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	1blf
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(no "Related Entries Specified in the PDB File" available for 1BLF)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 14)

Sites (16, 16)

SS Bonds (17, 17)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (4, 8)

Exons (16, 16)

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