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(-) Description

Title :  CRYSTAL STRUCTURE OF C-LOBE OF BOVINE LACTOFERRIN COMPLEXED WITH KETOROLAC AT 1.68 A RESOLUTION
 
Authors :  L. Gautam, P. K. Shukla, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Date :  25 Aug 12  (Deposition) - 19 Sep 12  (Release) - 19 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.68
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Metal Binding Protein, Nsaids, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Gautam, P. K. Shukla, M. Sinha, P. Kaur, S. Sharma, T. P. Singh
Crystal Structure Of C-Lobe Of Bovine Lactoferrin Complexed With Ketorolac At 1. 68 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LACTOTRANSFERRIN
    Chains: A
    EC Number: 3.4.21.-
    Fragment: C-LOBE, UNP RESIDUES 361-695
    Organism Common: BOVINE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Synonym: LACTOFERRIN, LACTOFERRICIN-B, LFCIN-B
 
Molecule 2 - C-TERMINAL PEPTIDE FROM LACTOTRANSFERRIN
    Chains: B
    Fragment: C-LOBE, UNP RESIDUES 700-705
    Organism Common: BOVINE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 14)

Asymmetric/Biological Unit (8, 14)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2CO31Ligand/IonCARBONATE ION
3FE1Ligand/IonFE (III) ION
4GOL2Ligand/IonGLYCEROL
5KTR1Ligand/Ion(1R)-5-BENZOYL-2,3-DIHYDRO-1H-PYRROLIZINE-1-CARBOXYLICACID
6NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
7SO41Ligand/IonSULFATE ION
8ZN2Ligand/IonZINC ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:365 , ASN A:368 , GLN A:614 , LEU A:617 , HOH A:999 , HOH A:1023 , HOH A:1130BINDING SITE FOR RESIDUE NAG A 701
02AC2SOFTWAREGLU A:659BINDING SITE FOR RESIDUE ZN A 707
03AC3SOFTWAREHIS A:588BINDING SITE FOR RESIDUE ZN A 708
04AC4SOFTWAREASP A:395 , TYR A:433 , TYR A:526 , HIS A:595 , CO3 A:710BINDING SITE FOR RESIDUE FE A 709
05AC5SOFTWAREASP A:395 , TYR A:433 , THR A:459 , ARG A:463 , THR A:464 , ALA A:465 , GLY A:466 , TYR A:526 , HIS A:595 , FE A:709BINDING SITE FOR RESIDUE CO3 A 710
06AC6SOFTWAREARG A:570 , ARG A:578 , HOH A:988 , HOH A:1103 , HOH A:1121BINDING SITE FOR RESIDUE SO4 A 711
07AC7SOFTWARETRP A:448 , ASN A:449 , GLN A:477 , THR A:478 , HOH A:1072BINDING SITE FOR RESIDUE GOL A 712
08AC8SOFTWARETHR A:430 , VAL A:591 , PRO A:593 , ASN A:594 , TYR A:660BINDING SITE FOR RESIDUE KTR A 713
09AC9SOFTWARESER A:519 , GLU A:521 , LYS A:522 , ARG A:531 , HOH A:1040 , HOH A:1051BINDING SITE FOR RESIDUE GOL A 714
10BC1SOFTWARELYS A:416 , SER A:417 , LEU A:434 , ASN A:545 , ASP A:546 , TRP A:549 , GLU A:555 , GLN A:585 , HOH A:942 , HOH A:1045 , HOH A:1070 , HOH A:1071 , HOH A:1136BINDING SITE FOR LINKED RESIDUES A 705 to 706
11BC2SOFTWAREASN A:476 , GLU A:664 , THR A:667 , ASN A:671 , HOH A:866 , HOH A:980 , HOH A:1065 , HOH A:1109BINDING SITE FOR LINKED RESIDUES A 702 to 704

(-) SS Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1A:348 -A:380
2A:358 -A:371
3A:405 -B:684
4A:425 -A:647
5A:457 -A:532
6A:481 -A:675
7A:491 -A:505
8A:502 -A:515
9A:573 -A:587
10A:625 -A:630

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:342 -Thr A:343
2Cys A:625 -Pro A:626

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4GRK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4GRK)

(-) Exons   (0, 0)

(no "Exon" information available for 4GRK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeehhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh....eeeehhhhhhhhhhh..eeeeeeee........hhhhh....eeeeeeee......hhhhh...eeee........hhhhhhhhhhhhh.........eee.......hhhhh....................hhhhhhhhhhhh....eeeeehhhhhhh.............hhh.eeee.....eee.hhhhhh..eee...eeee...hhhhhhhhhhhhhhhhh.........................eeeeee.....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4grk A 342 YTRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENRKSSKHSSLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRLCALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLKREDFRLLCLDGTRKPVTEAQSCHLAVAPNHAVVSRSDRAAHVEQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGGRPTYEEYLGTEYVTAIANLKKCS 676
                                   351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671     


Chain B from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4grk B 681 LEACAF 686
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4GRK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4GRK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4GRK)

(-) Gene Ontology  (50, 50)

Asymmetric/Biological Unit(hide GO term definitions)

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  3.4.21.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TRFL_BOVIN | P24627: 1blf 1lfc 1nkx 1sdx 1y58 2alu 2ays 2b65 2doj 2dp8 2dqv 2ds9 2dsf 2dvc 2dwa 2dwh 2dwi 2dwj 2dxr 2dxy 2dyx 2e0s 2e1s 2fa7 2g93 2h4i 2hca 2md1 2md2 2md3 2md4 2nuv 2nwj 2o1l 2o51 2ocu 2p1s 2px1 2q8j 2qje 2r71 2r9j 2zmb 3cfl 3ci8 3crb 3e9x 3iaz 3ib0 3ib1 3ib2 3k0v 3kj7 3mjn 3o97 3rgy 3sdf 3taj 3tod 3ttr 3tus 3u72 3u8q 3ugw 3uk4 3usd 3v5a 3vdf 4dig 4dxu 4fim 4fjp 4for 4g2z 4g77 4g8h 4n6p 4ned 4oqo 5cry 5hbc

(-) Related Entries Specified in the PDB File

3rgy MODEL